miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 3' -64.7 NC_001847.1 + 72309 0.65 0.515941
Target:  5'- aGCGCCucgGGGGGCUgcggcagCUGCgcgacucGGC-CCGGCu -3'
miRNA:   3'- -UGCGG---UCCUCGGa------GGCG-------CCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 67312 0.66 0.507598
Target:  5'- aGCGCCGGcAGCC-CCGCcGGCguauaGGUg -3'
miRNA:   3'- -UGCGGUCcUCGGaGGCG-CCGagg--CCG- -5'
6390 3' -64.7 NC_001847.1 + 58791 0.66 0.507598
Target:  5'- uACGgCAGGAacggacagcGCCUgCGcCGGCgccugggCCGGUg -3'
miRNA:   3'- -UGCgGUCCU---------CGGAgGC-GCCGa------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 61534 0.66 0.507598
Target:  5'- -gGUCAcGGGG-CUCUGCGaGCcgCCGGCa -3'
miRNA:   3'- ugCGGU-CCUCgGAGGCGC-CGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 89994 0.66 0.507598
Target:  5'- cGCGCCGcGGGGCUgcaccCCGCagaaGGCgCCGaGCu -3'
miRNA:   3'- -UGCGGU-CCUCGGa----GGCG----CCGaGGC-CG- -5'
6390 3' -64.7 NC_001847.1 + 34128 0.66 0.507598
Target:  5'- gGCGCCugccgcGGuGGCCgCCGCGGCgagcgcgCUGcGCg -3'
miRNA:   3'- -UGCGGu-----CC-UCGGaGGCGCCGa------GGC-CG- -5'
6390 3' -64.7 NC_001847.1 + 107190 0.66 0.507598
Target:  5'- cGCGaCCGcGAGCgCgcgcgCCGCGGC-CCaGGCg -3'
miRNA:   3'- -UGC-GGUcCUCG-Ga----GGCGCCGaGG-CCG- -5'
6390 3' -64.7 NC_001847.1 + 108442 0.66 0.507598
Target:  5'- gACGU--GGAcGCCgagCUGCGGCUggagcccgCCGGCg -3'
miRNA:   3'- -UGCGguCCU-CGGa--GGCGCCGA--------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 31806 0.66 0.507598
Target:  5'- cGCGUCGGGcacuuGcCCUCCGCGGacaggggggUUGGCg -3'
miRNA:   3'- -UGCGGUCCu----C-GGAGGCGCCga-------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 36538 0.66 0.507598
Target:  5'- uUGCgGGGuGCCgcgCCGCccaaGCgCCGGCg -3'
miRNA:   3'- uGCGgUCCuCGGa--GGCGc---CGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 91315 0.66 0.507598
Target:  5'- aGCGCCAGcGcggcaaagaagcGGCCgCCGUcgcccucgaccGGCgcgCCGGCg -3'
miRNA:   3'- -UGCGGUC-C------------UCGGaGGCG-----------CCGa--GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 88367 0.66 0.507598
Target:  5'- gGCGCgCGGGcgcggcggaccGGCCcCgCGCGGCgggCgGGCg -3'
miRNA:   3'- -UGCG-GUCC-----------UCGGaG-GCGCCGa--GgCCG- -5'
6390 3' -64.7 NC_001847.1 + 86363 0.66 0.507598
Target:  5'- gGCGCCcgcagacgAGGcGGCgggCCGCGGCggCgGGCg -3'
miRNA:   3'- -UGCGG--------UCC-UCGga-GGCGCCGa-GgCCG- -5'
6390 3' -64.7 NC_001847.1 + 13105 0.66 0.507598
Target:  5'- cACGCCGccguCCUCCuCGGCUgCGGCc -3'
miRNA:   3'- -UGCGGUccucGGAGGcGCCGAgGCCG- -5'
6390 3' -64.7 NC_001847.1 + 4377 0.66 0.507598
Target:  5'- cGCGaCCGcGAGCgCgcgcgCCGCGGC-CCaGGCg -3'
miRNA:   3'- -UGC-GGUcCUCG-Ga----GGCGCCGaGG-CCG- -5'
6390 3' -64.7 NC_001847.1 + 66680 0.66 0.507598
Target:  5'- cGCGCgGcGGGGCCccggCCGCGGgcgcggaccuCUgCGGCc -3'
miRNA:   3'- -UGCGgU-CCUCGGa---GGCGCC----------GAgGCCG- -5'
6390 3' -64.7 NC_001847.1 + 37454 0.66 0.507598
Target:  5'- aGCGCagCAGcGGGCCUgCGUuggccgGGC-CCGGCc -3'
miRNA:   3'- -UGCG--GUC-CUCGGAgGCG------CCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 134619 0.66 0.507598
Target:  5'- cGCGUCGGGcacuuGcCCUCCGCGGacaggggggUUGGCg -3'
miRNA:   3'- -UGCGGUCCu----C-GGAGGCGCCga-------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 69236 0.66 0.506674
Target:  5'- gGCGCCGcGGcaacgcuGGCCUacuacgCGCGGCUggCGGCg -3'
miRNA:   3'- -UGCGGU-CC-------UCGGAg-----GCGCCGAg-GCCG- -5'
6390 3' -64.7 NC_001847.1 + 96880 0.66 0.506674
Target:  5'- cGCGCUGGGGagggaccGCCgugcUCgCGCGGgaCUGGCg -3'
miRNA:   3'- -UGCGGUCCU-------CGG----AG-GCGCCgaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.