miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 5' -50.4 NC_001847.1 + 104830 0.66 0.994154
Target:  5'- -cGCCGGggGgGCGGGcg-UCCgcaGCu -3'
miRNA:   3'- gaCGGUCauUgCGCCCaaaAGGaa-CG- -5'
6390 5' -50.4 NC_001847.1 + 58578 0.66 0.994154
Target:  5'- -gGCCAGcUAA-GCGGGccg-CUUUGCg -3'
miRNA:   3'- gaCGGUC-AUUgCGCCCaaaaGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 2530 0.66 0.994154
Target:  5'- gCUGCCGGgc-CGCGGGa---CCgcUGCu -3'
miRNA:   3'- -GACGGUCauuGCGCCCaaaaGGa-ACG- -5'
6390 5' -50.4 NC_001847.1 + 57689 0.66 0.994154
Target:  5'- gUGCUGGgcGcCGCGGGUg--CCgcGCu -3'
miRNA:   3'- gACGGUCauU-GCGCCCAaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 123666 0.66 0.993221
Target:  5'- -aGCCAgauGUGugGCGGGgcucgCCacGCg -3'
miRNA:   3'- gaCGGU---CAUugCGCCCaaaa-GGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 84009 0.66 0.993221
Target:  5'- -cGCCAGcgagAGCGUGuGGUUggCCUcGUa -3'
miRNA:   3'- gaCGGUCa---UUGCGC-CCAAaaGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 54521 0.66 0.993221
Target:  5'- -gGgCGGUGGgGCGGGgccgUCCggggGCg -3'
miRNA:   3'- gaCgGUCAUUgCGCCCaaa-AGGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 59129 0.66 0.993221
Target:  5'- gCU-CCGGccGCGCGGGUggUCCcagUUGUa -3'
miRNA:   3'- -GAcGGUCauUGCGCCCAaaAGG---AACG- -5'
6390 5' -50.4 NC_001847.1 + 6847 0.66 0.991835
Target:  5'- -gGCgaGGUGcucgagcagcacgcGCGCGGGUagggCCUUGCc -3'
miRNA:   3'- gaCGg-UCAU--------------UGCGCCCAaaa-GGAACG- -5'
6390 5' -50.4 NC_001847.1 + 49947 0.66 0.991001
Target:  5'- -cGCC-GUGGCGCGcGGUg--CCgcGCa -3'
miRNA:   3'- gaCGGuCAUUGCGC-CCAaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 44127 0.66 0.991001
Target:  5'- -aGCCGGUugcuuuACGUGGGcg--CCaUGCg -3'
miRNA:   3'- gaCGGUCAu-----UGCGCCCaaaaGGaACG- -5'
6390 5' -50.4 NC_001847.1 + 84700 0.66 0.991001
Target:  5'- uUGCCGuccuuGUcgcAGCGCGGGU--UCCcgGCa -3'
miRNA:   3'- gACGGU-----CA---UUGCGCCCAaaAGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 1344 0.66 0.989694
Target:  5'- -cGCCGcgcccuGCGCGGccaugUCCUUGCg -3'
miRNA:   3'- gaCGGUcau---UGCGCCcaaa-AGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 101846 0.66 0.989694
Target:  5'- gCUGCgCAcaAACGCGGGggcgucgUCCUcGCc -3'
miRNA:   3'- -GACG-GUcaUUGCGCCCaaa----AGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 38574 0.66 0.989694
Target:  5'- gCUGCCGGagcCGCGGaGgc-UCCUgGCg -3'
miRNA:   3'- -GACGGUCauuGCGCC-CaaaAGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 4970 0.66 0.989694
Target:  5'- -gGCCGGgcgccCGCGGGgucgugacgUCCUcGCa -3'
miRNA:   3'- gaCGGUCauu--GCGCCCaaa------AGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 104157 0.66 0.989694
Target:  5'- -cGCCGcgcccuGCGCGGccaugUCCUUGCg -3'
miRNA:   3'- gaCGGUcau---UGCGCCcaaa-AGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 88188 0.66 0.989694
Target:  5'- -gGCCcg-GGCGCGGGgcUUUCUgcUGCc -3'
miRNA:   3'- gaCGGucaUUGCGCCCaaAAGGA--ACG- -5'
6390 5' -50.4 NC_001847.1 + 43747 0.67 0.988244
Target:  5'- uCUGCCAacAACGCGGGcc-UCUUcgacUGCa -3'
miRNA:   3'- -GACGGUcaUUGCGCCCaaaAGGA----ACG- -5'
6390 5' -50.4 NC_001847.1 + 60860 0.67 0.988244
Target:  5'- -cGCCAGggcguccAGCGCGGGgcggCCgcGCc -3'
miRNA:   3'- gaCGGUCa------UUGCGCCCaaaaGGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.