Results 1 - 20 of 372 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 108057 | 0.66 | 0.734068 |
Target: 5'- cGGCGAcGCCuccagcguGGGCGCGGuGCcgCCcgggGGGCUg -3' miRNA: 3'- -CCGUU-CGG--------UCCGUGCC-CGa-GG----UUCGA- -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 17080 | 0.66 | 0.734068 |
Target: 5'- cGGCGuGCCAGccGCguaaaaGCGGcGCUCCAuguuAGCg -3' miRNA: 3'- -CCGUuCGGUC--CG------UGCC-CGAGGU----UCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 58587 | 0.66 | 0.734068 |
Target: 5'- aGCGGGCCGcuuuGcGCGCGGGCUCgccuUucGCUa -3' miRNA: 3'- cCGUUCGGU----C-CGUGCCCGAG----GuuCGA- -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 101063 | 0.66 | 0.734068 |
Target: 5'- aGGCcGGCCccgGGGCcgccGCGGGggCCGGGUc -3' miRNA: 3'- -CCGuUCGG---UCCG----UGCCCgaGGUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 55275 | 0.66 | 0.734068 |
Target: 5'- cGGC--GCCGGGCccggACGGGCggcagucgugUCCcAGCg -3' miRNA: 3'- -CCGuuCGGUCCG----UGCCCG----------AGGuUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 54817 | 0.66 | 0.734068 |
Target: 5'- uGGCGAGCgCGGGCACGGugGUggaCAAccGCg -3' miRNA: 3'- -CCGUUCG-GUCCGUGCC--CGag-GUU--CGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 16698 | 0.66 | 0.734068 |
Target: 5'- gGGCGAGCC-GGCA-GGcGCagaCGAGCa -3' miRNA: 3'- -CCGUUCGGuCCGUgCC-CGag-GUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 104420 | 0.66 | 0.734068 |
Target: 5'- aGUcGGCCAcguccGCGCGGGCgUCCAggAGCg -3' miRNA: 3'- cCGuUCGGUc----CGUGCCCG-AGGU--UCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 111018 | 0.66 | 0.734068 |
Target: 5'- aGCAAGUUcGcGCGCGGGCUCau-GCc -3' miRNA: 3'- cCGUUCGGuC-CGUGCCCGAGguuCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 116764 | 0.66 | 0.734068 |
Target: 5'- aGGCGAggacGCCgAGGCAuCGGGC-CCGccgacgaucuugGGCg -3' miRNA: 3'- -CCGUU----CGG-UCCGU-GCCCGaGGU------------UCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 85612 | 0.66 | 0.73309 |
Target: 5'- aGGCGcuaaAGCCAaagcgccGGCGCGcuuGCUCgCAGGCg -3' miRNA: 3'- -CCGU----UCGGU-------CCGUGCc--CGAG-GUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 86967 | 0.66 | 0.728184 |
Target: 5'- cGGCAcagcaggacgccgccGGCCGGGC-CGGcGCgcgCCGgcccGGCg -3' miRNA: 3'- -CCGU---------------UCGGUCCGuGCC-CGa--GGU----UCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 122134 | 0.66 | 0.724245 |
Target: 5'- cGCGacGGCCGGcGCGCaGGGCgCCGcGCg -3' miRNA: 3'- cCGU--UCGGUC-CGUG-CCCGaGGUuCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 51061 | 0.66 | 0.724245 |
Target: 5'- aGCAGGCCAccgaggcguucGuGCGCGGGCUggUCGAGg- -3' miRNA: 3'- cCGUUCGGU-----------C-CGUGCCCGA--GGUUCga -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 84539 | 0.66 | 0.724245 |
Target: 5'- uGGCGGGCgGGGCG-GGGCgugcgCCucGUa -3' miRNA: 3'- -CCGUUCGgUCCGUgCCCGa----GGuuCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 22103 | 0.66 | 0.724245 |
Target: 5'- aGGCGcGCCGGGggcgacaGCGGGCgcgCCcuGGGCc -3' miRNA: 3'- -CCGUuCGGUCCg------UGCCCGa--GG--UUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 34971 | 0.66 | 0.724245 |
Target: 5'- cGGCcGGCCAGGCGgccagGGGCaa-GGGCa -3' miRNA: 3'- -CCGuUCGGUCCGUg----CCCGaggUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 35076 | 0.66 | 0.724245 |
Target: 5'- gGGCAagcAGCCAGGCAaucacuCGaGaGCUaagugCCGAGCg -3' miRNA: 3'- -CCGU---UCGGUCCGU------GC-C-CGA-----GGUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 57983 | 0.66 | 0.724245 |
Target: 5'- aGGCAGGaCC-GGCGCGguGGCggCgCAGGCg -3' miRNA: 3'- -CCGUUC-GGuCCGUGC--CCGa-G-GUUCGa -5' |
|||||||
6391 | 5' | -59.3 | NC_001847.1 | + | 92019 | 0.66 | 0.724245 |
Target: 5'- cGCGGGCCcgcgccgucugcGGGCAccgcCGGcGcCUCCGGGCg -3' miRNA: 3'- cCGUUCGG------------UCCGU----GCC-C-GAGGUUCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home