miRNA display CGI


Results 1 - 20 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 3' -56.9 NC_001847.1 + 60713 0.66 0.869999
Target:  5'- gUCGuGCGCcgccacgaccuccacGACGgGCGcGGGCGCGGc- -3'
miRNA:   3'- -AGUuUGCG---------------CUGCaUGC-CCCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 34377 0.66 0.867025
Target:  5'- gCGAGCGCcAUGgcGCGGGGCGaccuGGAc -3'
miRNA:   3'- aGUUUGCGcUGCa-UGCCCCGCg---CCUu -5'
6395 3' -56.9 NC_001847.1 + 41993 0.66 0.867025
Target:  5'- cCGAGCGCuGCGUc---GGCGCGGAAc -3'
miRNA:   3'- aGUUUGCGcUGCAugccCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 30422 0.66 0.867025
Target:  5'- gCAAGCucGUGGCGggcGCGGaGGCGcCGGGg -3'
miRNA:   3'- aGUUUG--CGCUGCa--UGCC-CCGC-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 50347 0.66 0.867025
Target:  5'- aCGGAgGUgGACG-ACGGcGGCGCGGc- -3'
miRNA:   3'- aGUUUgCG-CUGCaUGCC-CCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 31089 0.66 0.867025
Target:  5'- --cGACGCGGCGc-UGGGGC-CGGGc -3'
miRNA:   3'- aguUUGCGCUGCauGCCCCGcGCCUu -5'
6395 3' -56.9 NC_001847.1 + 122128 0.66 0.867025
Target:  5'- gCAGGuCGCGACGgcCGGcGCGCaGGGc -3'
miRNA:   3'- aGUUU-GCGCUGCauGCCcCGCG-CCUu -5'
6395 3' -56.9 NC_001847.1 + 12482 0.66 0.867025
Target:  5'- uUCccGCGUGGCG-GCGGGG-GCGGc- -3'
miRNA:   3'- -AGuuUGCGCUGCaUGCCCCgCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 104377 0.66 0.867025
Target:  5'- gCAGacGCGCGGCGcugcaGCGGGcCGCGGu- -3'
miRNA:   3'- aGUU--UGCGCUGCa----UGCCCcGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 15315 0.66 0.867025
Target:  5'- gUCGGGggcCGCgGGCGUaGCGGGG-GCGGGc -3'
miRNA:   3'- -AGUUU---GCG-CUGCA-UGCCCCgCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 12931 0.66 0.867025
Target:  5'- -gGGGCGCG-CGUGucgucgugcggUGGGGCgGCGGGc -3'
miRNA:   3'- agUUUGCGCuGCAU-----------GCCCCG-CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 69464 0.66 0.859444
Target:  5'- ---cGCGCGGCGgcgGCGGGGCuccugcugGcCGGGc -3'
miRNA:   3'- aguuUGCGCUGCa--UGCCCCG--------C-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 101170 0.66 0.859444
Target:  5'- -gGGGC-CGGgGU-CGGGGCGCGGu- -3'
miRNA:   3'- agUUUGcGCUgCAuGCCCCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 54478 0.66 0.859444
Target:  5'- -aGGGCGgGACGgacaacgACGGcGGCGcCGGGg -3'
miRNA:   3'- agUUUGCgCUGCa------UGCC-CCGC-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 14654 0.66 0.859444
Target:  5'- cCGcuCGCuGCGaGCGGGGCGCGu-- -3'
miRNA:   3'- aGUuuGCGcUGCaUGCCCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 70393 0.66 0.859444
Target:  5'- cCGggUGCGACuGUAcggcCGGGGUGUccGGAAu -3'
miRNA:   3'- aGUuuGCGCUG-CAU----GCCCCGCG--CCUU- -5'
6395 3' -56.9 NC_001847.1 + 133711 0.66 0.859444
Target:  5'- cCGAGCGCaaauaGUGCcuggcGGGCGCGGGg -3'
miRNA:   3'- aGUUUGCGcug--CAUGc----CCCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 36074 0.66 0.859444
Target:  5'- aCAGGCGCGcuggacgcGCGgcugGCGGaGCGCGGc- -3'
miRNA:   3'- aGUUUGCGC--------UGCa---UGCCcCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 80345 0.66 0.859444
Target:  5'- cUCGccAGCGCGGC--GCGGaaGGCGCGGc- -3'
miRNA:   3'- -AGU--UUGCGCUGcaUGCC--CCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 124693 0.66 0.859444
Target:  5'- cCAgcAACGCGGCcaggggaGCcGGGCGCGGGGg -3'
miRNA:   3'- aGU--UUGCGCUGca-----UGcCCCGCGCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.