miRNA display CGI


Results 1 - 20 of 941 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 5' -58.9 NC_001847.1 + 66678 0.66 0.804526
Target:  5'- cCCGCgCGGcggggccccGGcCGCGGGC-GCGgaccucugCGGCCg -3'
miRNA:   3'- -GGCG-GCU---------UC-GCGCUCGaCGCa-------GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 124920 0.66 0.804526
Target:  5'- gCGCCGggGgcgacaGCGGGC-GCGcCcugGGCCc -3'
miRNA:   3'- gGCGGCuuCg-----CGCUCGaCGCaG---UCGG- -5'
6423 5' -58.9 NC_001847.1 + 99160 0.66 0.804526
Target:  5'- gCGCCuuguGGCGCcAGCcgGCGggAGCCa -3'
miRNA:   3'- gGCGGcu--UCGCGcUCGa-CGCagUCGG- -5'
6423 5' -58.9 NC_001847.1 + 106695 0.66 0.804526
Target:  5'- gCgGcCCGucGCGCGGcGCcGCGgcgUAGCCa -3'
miRNA:   3'- -GgC-GGCuuCGCGCU-CGaCGCa--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 63199 0.66 0.804526
Target:  5'- -gGCCGAGcccGCGCGcGCUcuccGCGUCGuGCg -3'
miRNA:   3'- ggCGGCUU---CGCGCuCGA----CGCAGU-CGg -5'
6423 5' -58.9 NC_001847.1 + 73887 0.66 0.804526
Target:  5'- uCCGCCGgcGCcccGCGcAGCgaugGCc-CAGCCc -3'
miRNA:   3'- -GGCGGCuuCG---CGC-UCGa---CGcaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 106529 0.66 0.804526
Target:  5'- cCCGCgGccGcCGCGuAGC-GCG-CGGCCg -3'
miRNA:   3'- -GGCGgCuuC-GCGC-UCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 52025 0.66 0.804526
Target:  5'- gCCGCCGAGGaggugcuaCGCGAG--GCGgaGGCCc -3'
miRNA:   3'- -GGCGGCUUC--------GCGCUCgaCGCagUCGG- -5'
6423 5' -58.9 NC_001847.1 + 54565 0.66 0.804526
Target:  5'- gCGCgGAGGacgacggcccCGCGGGCUGgG-CGGCg -3'
miRNA:   3'- gGCGgCUUC----------GCGCUCGACgCaGUCGg -5'
6423 5' -58.9 NC_001847.1 + 116674 0.66 0.804526
Target:  5'- aCUGCCGcacggacgugugGAGCGCGGGC-GuCGUC-GCg -3'
miRNA:   3'- -GGCGGC------------UUCGCGCUCGaC-GCAGuCGg -5'
6423 5' -58.9 NC_001847.1 + 45797 0.66 0.804526
Target:  5'- gCuCCGAAGCGCGcaaAGCccgGCGggagCuGCCg -3'
miRNA:   3'- gGcGGCUUCGCGC---UCGa--CGCa---GuCGG- -5'
6423 5' -58.9 NC_001847.1 + 3882 0.66 0.804526
Target:  5'- gCgGcCCGucGCGCGGcGCcGCGgcgUAGCCa -3'
miRNA:   3'- -GgC-GGCuuCGCGCU-CGaCGCa--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 3716 0.66 0.804526
Target:  5'- cCCGCgGccGcCGCGuAGC-GCG-CGGCCg -3'
miRNA:   3'- -GGCGgCuuC-GCGC-UCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 51230 0.66 0.804526
Target:  5'- cCUGCuCGcGGGCGCGccGCUGC--CGGCCg -3'
miRNA:   3'- -GGCG-GC-UUCGCGCu-CGACGcaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 48535 0.66 0.804526
Target:  5'- cCCGCCucGAGGCGCGcccggAGCcGCGUaaagaacgaAGCg -3'
miRNA:   3'- -GGCGG--CUUCGCGC-----UCGaCGCAg--------UCGg -5'
6423 5' -58.9 NC_001847.1 + 13108 0.66 0.804526
Target:  5'- gCCGCCGuccuccucGGCuGCG-GCcGCGaUCAGCa -3'
miRNA:   3'- -GGCGGCu-------UCG-CGCuCGaCGC-AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 1189 0.66 0.804526
Target:  5'- aCCGCCGcGGC-CGgcAGCU-CGUCGGgCg -3'
miRNA:   3'- -GGCGGCuUCGcGC--UCGAcGCAGUCgG- -5'
6423 5' -58.9 NC_001847.1 + 106337 0.66 0.804526
Target:  5'- gCGCCu--GCGUGAacgGCgacgGCGUCccGGCCg -3'
miRNA:   3'- gGCGGcuuCGCGCU---CGa---CGCAG--UCGG- -5'
6423 5' -58.9 NC_001847.1 + 22107 0.66 0.804526
Target:  5'- gCGCCGggGgcgacaGCGGGC-GCGcCcugGGCCc -3'
miRNA:   3'- gGCGGCuuCg-----CGCUCGaCGCaG---UCGG- -5'
6423 5' -58.9 NC_001847.1 + 19680 0.66 0.804526
Target:  5'- gUGCCc--GCGCGGGUgugGCGUUuccuuGCCg -3'
miRNA:   3'- gGCGGcuuCGCGCUCGa--CGCAGu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.