miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 57463 0.66 0.881958
Target:  5'- uCUGGAggaccgcgaguucuuGCCGCuagaaguguacaCGCGCGCCGAGCu--- -3'
miRNA:   3'- -GGCCU---------------CGGUG------------GCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 99511 0.66 0.881958
Target:  5'- cCUGGAGUuugcgccgagccccgCGCCGCGCGCUuu-CGUu- -3'
miRNA:   3'- -GGCCUCG---------------GUGGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 66348 0.66 0.881958
Target:  5'- gCGGGcGCCGCCGUggcgaucguccccguGgCGCCGAACGc-- -3'
miRNA:   3'- gGCCU-CGGUGGCG---------------C-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 96939 0.66 0.879101
Target:  5'- cCCGG-GCCuCCGCGgGCggCAGGCGc-- -3'
miRNA:   3'- -GGCCuCGGuGGCGCgCG--GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81790 0.66 0.879101
Target:  5'- cCCGcGGCCGCCagcaGCGCGUCGcuuuccgcugcGGCGUGGu -3'
miRNA:   3'- -GGCcUCGGUGG----CGCGCGGU-----------UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 11972 0.66 0.879101
Target:  5'- gCGGcugagcGCCGCCGCGCcGUCuccgGAACGUAc -3'
miRNA:   3'- gGCCu-----CGGUGGCGCG-CGG----UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 41273 0.66 0.879101
Target:  5'- gCCGGcgcgcGGUCAgCaGCGCGCC-GGCGUAGu -3'
miRNA:   3'- -GGCC-----UCGGUgG-CGCGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 105255 0.66 0.879101
Target:  5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3'
miRNA:   3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 4171 0.66 0.879101
Target:  5'- gCGG-GCCuuguuuuggGCCGCGCGCCcGugGg-- -3'
miRNA:   3'- gGCCuCGG---------UGGCGCGCGGuUugUauu -5'
6424 3' -56.3 NC_001847.1 + 2442 0.66 0.879101
Target:  5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3'
miRNA:   3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 3990 0.66 0.879101
Target:  5'- gCCGGgcgcgcGGCC-CCGCgggGCGCCGGGCc--- -3'
miRNA:   3'- -GGCC------UCGGuGGCG---CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 56811 0.66 0.879101
Target:  5'- aCGGGGCCG--GCGCGCCugggGGCGc-- -3'
miRNA:   3'- gGCCUCGGUggCGCGCGGu---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38944 0.66 0.879101
Target:  5'- cCCGG-GCCcggggGCCGCgaGCGCCAuGGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----UGGCG--CGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 112401 0.66 0.879101
Target:  5'- uUGGuuGCgCGCCGCGCGgCAGuCAUAu -3'
miRNA:   3'- gGCCu-CG-GUGGCGCGCgGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 109904 0.66 0.879101
Target:  5'- aCCGGcAGCUcguuguccCCGCGaCGCCGAuCAUGc -3'
miRNA:   3'- -GGCC-UCGGu-------GGCGC-GCGGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 33962 0.66 0.879101
Target:  5'- aCCcGAGCgCGCUG-GCGCCGGGCGc-- -3'
miRNA:   3'- -GGcCUCG-GUGGCgCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 54458 0.66 0.879101
Target:  5'- gCCGcAGCCGCCGCcgGCGCgCAGcCGUu- -3'
miRNA:   3'- -GGCcUCGGUGGCG--CGCG-GUUuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 15882 0.66 0.879101
Target:  5'- cUCGacGAGCCGCgCGgGCGCCGc-CAUAAu -3'
miRNA:   3'- -GGC--CUCGGUG-GCgCGCGGUuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 97329 0.66 0.879101
Target:  5'- gUCGGcgucgcGCCcgcccgGCCGCGUGUCAAACAg-- -3'
miRNA:   3'- -GGCCu-----CGG------UGGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81972 0.66 0.879101
Target:  5'- gCCGG-GUCGCaGCGC-CCGAGCAg-- -3'
miRNA:   3'- -GGCCuCGGUGgCGCGcGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.