Results 1 - 20 of 611 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 66348 | 0.66 | 0.881958 |
Target: 5'- gCGGGcGCCGCCGUggcgaucguccccguGgCGCCGAACGc-- -3' miRNA: 3'- gGCCU-CGGUGGCG---------------C-GCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 57463 | 0.66 | 0.881958 |
Target: 5'- uCUGGAggaccgcgaguucuuGCCGCuagaaguguacaCGCGCGCCGAGCu--- -3' miRNA: 3'- -GGCCU---------------CGGUG------------GCGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 99511 | 0.66 | 0.881958 |
Target: 5'- cCUGGAGUuugcgccgagccccgCGCCGCGCGCUuu-CGUu- -3' miRNA: 3'- -GGCCUCG---------------GUGGCGCGCGGuuuGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 2442 | 0.66 | 0.879101 |
Target: 5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3' miRNA: 3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 4171 | 0.66 | 0.879101 |
Target: 5'- gCGG-GCCuuguuuuggGCCGCGCGCCcGugGg-- -3' miRNA: 3'- gGCCuCGG---------UGGCGCGCGGuUugUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 33962 | 0.66 | 0.879101 |
Target: 5'- aCCcGAGCgCGCUG-GCGCCGGGCGc-- -3' miRNA: 3'- -GGcCUCG-GUGGCgCGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 11972 | 0.66 | 0.879101 |
Target: 5'- gCGGcugagcGCCGCCGCGCcGUCuccgGAACGUAc -3' miRNA: 3'- gGCCu-----CGGUGGCGCG-CGG----UUUGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 41273 | 0.66 | 0.879101 |
Target: 5'- gCCGGcgcgcGGUCAgCaGCGCGCC-GGCGUAGu -3' miRNA: 3'- -GGCC-----UCGGUgG-CGCGCGGuUUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 105255 | 0.66 | 0.879101 |
Target: 5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3' miRNA: 3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 96939 | 0.66 | 0.879101 |
Target: 5'- cCCGG-GCCuCCGCGgGCggCAGGCGc-- -3' miRNA: 3'- -GGCCuCGGuGGCGCgCG--GUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 81790 | 0.66 | 0.879101 |
Target: 5'- cCCGcGGCCGCCagcaGCGCGUCGcuuuccgcugcGGCGUGGu -3' miRNA: 3'- -GGCcUCGGUGG----CGCGCGGU-----------UUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 3990 | 0.66 | 0.879101 |
Target: 5'- gCCGGgcgcgcGGCC-CCGCgggGCGCCGGGCc--- -3' miRNA: 3'- -GGCC------UCGGuGGCG---CGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 81972 | 0.66 | 0.879101 |
Target: 5'- gCCGG-GUCGCaGCGC-CCGAGCAg-- -3' miRNA: 3'- -GGCCuCGGUGgCGCGcGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 97329 | 0.66 | 0.879101 |
Target: 5'- gUCGGcgucgcGCCcgcccgGCCGCGUGUCAAACAg-- -3' miRNA: 3'- -GGCCu-----CGG------UGGCGCGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 15882 | 0.66 | 0.879101 |
Target: 5'- cUCGacGAGCCGCgCGgGCGCCGc-CAUAAu -3' miRNA: 3'- -GGC--CUCGGUG-GCgCGCGGUuuGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 54458 | 0.66 | 0.879101 |
Target: 5'- gCCGcAGCCGCCGCcgGCGCgCAGcCGUu- -3' miRNA: 3'- -GGCcUCGGUGGCG--CGCG-GUUuGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 109904 | 0.66 | 0.879101 |
Target: 5'- aCCGGcAGCUcguuguccCCGCGaCGCCGAuCAUGc -3' miRNA: 3'- -GGCC-UCGGu-------GGCGC-GCGGUUuGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 112401 | 0.66 | 0.879101 |
Target: 5'- uUGGuuGCgCGCCGCGCGgCAGuCAUAu -3' miRNA: 3'- gGCCu-CG-GUGGCGCGCgGUUuGUAUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 38944 | 0.66 | 0.879101 |
Target: 5'- cCCGG-GCCcggggGCCGCgaGCGCCAuGGCGg-- -3' miRNA: 3'- -GGCCuCGG-----UGGCG--CGCGGU-UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 56811 | 0.66 | 0.879101 |
Target: 5'- aCGGGGCCG--GCGCGCCugggGGCGc-- -3' miRNA: 3'- gGCCUCGGUggCGCGCGGu---UUGUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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