Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6426 | 5' | -58.4 | NC_001847.1 | + | 119903 | 0.66 | 0.777895 |
Target: 5'- cUGCAGguGGuGGUGuacggccgacGCCAGCUcGAc- -3' miRNA: 3'- -ACGUCguCCuCCACu---------CGGUCGA-CUcc -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 12948 | 0.66 | 0.777895 |
Target: 5'- gUGCGGUGGGGcGGcGGGCCGGggGuGGc -3' miRNA: 3'- -ACGUCGUCCU-CCaCUCGGUCgaCuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 118674 | 0.66 | 0.776961 |
Target: 5'- gGCAGgGcGGGGGuUGGGCCgggccgcagccccGGCUGGGu -3' miRNA: 3'- aCGUCgU-CCUCC-ACUCGG-------------UCGACUCc -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 13809 | 0.66 | 0.772273 |
Target: 5'- cGCAGCGGuGuacGG-GGGCCGGCgugugacggugcgcGAGGg -3' miRNA: 3'- aCGUCGUC-Cu--CCaCUCGGUCGa-------------CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 97957 | 0.66 | 0.768499 |
Target: 5'- aGCGGCGaGGGGUGGcuguacGUCAGCacGAGGu -3' miRNA: 3'- aCGUCGUcCUCCACU------CGGUCGa-CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 29996 | 0.66 | 0.765656 |
Target: 5'- cGCGGCGGGAGcc--GCCGcugcccgcccgcguGCUGGGGc -3' miRNA: 3'- aCGUCGUCCUCcacuCGGU--------------CGACUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 132809 | 0.66 | 0.765656 |
Target: 5'- cGCGGCGGGAGcc--GCCGcugcccgcccgcguGCUGGGGc -3' miRNA: 3'- aCGUCGUCCUCcacuCGGU--------------CGACUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 75008 | 0.66 | 0.758981 |
Target: 5'- cGcCGGCGGGcGGG-GGGCCAGC--GGGc -3' miRNA: 3'- aC-GUCGUCC-UCCaCUCGGUCGacUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 95340 | 0.66 | 0.749349 |
Target: 5'- gGC-GCAGGGGGcGcAGCCAGggGAGcGg -3' miRNA: 3'- aCGuCGUCCUCCaC-UCGGUCgaCUC-C- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 134632 | 0.66 | 0.749349 |
Target: 5'- aGCgugGGCuGGGGGcGGGCCGGCagcaggcgcgGAGGc -3' miRNA: 3'- aCG---UCGuCCUCCaCUCGGUCGa---------CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 74684 | 0.66 | 0.74352 |
Target: 5'- cGCGGCAGGAcGGc-GGCCGGCgcuuuugccuguacGGGGc -3' miRNA: 3'- aCGUCGUCCU-CCacUCGGUCGa-------------CUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 113688 | 0.66 | 0.739614 |
Target: 5'- cGgGGCGGGAGGgggaaggggGAGCCggAGCUuuGGc -3' miRNA: 3'- aCgUCGUCCUCCa--------CUCGG--UCGAcuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 124567 | 0.66 | 0.739614 |
Target: 5'- cGCGcGCGGGGGGgccGCCGGCgccGGGc -3' miRNA: 3'- aCGU-CGUCCUCCacuCGGUCGac-UCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 125280 | 0.66 | 0.739614 |
Target: 5'- gGCGGCAGGAgccgucgcaGGUGGGgCAagGCUGGc- -3' miRNA: 3'- aCGUCGUCCU---------CCACUCgGU--CGACUcc -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 10875 | 0.66 | 0.739614 |
Target: 5'- cGgGGCGGGAGGgggaaggggGAGCCggAGCUuuGGc -3' miRNA: 3'- aCgUCGUCCUCCa--------CUCGG--UCGAcuCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 40608 | 0.66 | 0.739614 |
Target: 5'- cGCAGCguGGGGuuGGUGAuaaGgCAGgUGAGGa -3' miRNA: 3'- aCGUCG--UCCU--CCACU---CgGUCgACUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 32878 | 0.66 | 0.739614 |
Target: 5'- gGCGGCcgacGGcGAGGccucggGGGCCGGC-GGGGa -3' miRNA: 3'- aCGUCG----UC-CUCCa-----CUCGGUCGaCUCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 22467 | 0.66 | 0.739614 |
Target: 5'- gGCGGCAGGAgccgucgcaGGUGGGgCAagGCUGGc- -3' miRNA: 3'- aCGUCGUCCU---------CCACUCgGU--CGACUcc -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 21754 | 0.66 | 0.739614 |
Target: 5'- cGCGcGCGGGGGGgccGCCGGCgccGGGc -3' miRNA: 3'- aCGU-CGUCCUCCacuCGGUCGac-UCC- -5' |
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6426 | 5' | -58.4 | NC_001847.1 | + | 134388 | 0.66 | 0.738635 |
Target: 5'- gGCGGCGGGccggccucgcccuAGGgGGGCCcGCgggaaggGAGGg -3' miRNA: 3'- aCGUCGUCC-------------UCCaCUCGGuCGa------CUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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