miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 73171 0.66 0.891864
Target:  5'- --cGGAGGaGgcgGACGCG-GCGGCGGa- -3'
miRNA:   3'- acaUCUCC-Ca--CUGCGCuUGCCGUCgc -5'
6445 3' -56.3 NC_001847.1 + 86557 0.66 0.891864
Target:  5'- --aAGGGGGacgccgagGACgGCGccgaaGACGGCGGCGc -3'
miRNA:   3'- acaUCUCCCa-------CUG-CGC-----UUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 93750 0.66 0.891864
Target:  5'- -cUGGAGGcc-GCGCGGcugcCGGCGGCGg -3'
miRNA:   3'- acAUCUCCcacUGCGCUu---GCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 59048 0.66 0.891864
Target:  5'- --nGGAGGaGagugGugGUGAgGCGGCAGCu -3'
miRNA:   3'- acaUCUCC-Ca---CugCGCU-UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 68210 0.66 0.891864
Target:  5'- aGUAGGGGGcGcACGgGccGCGGCGGgGc -3'
miRNA:   3'- aCAUCUCCCaC-UGCgCu-UGCCGUCgC- -5'
6445 3' -56.3 NC_001847.1 + 65541 0.66 0.891864
Target:  5'- ---cGAGGG-GGCGCucGCGGaCGGCu -3'
miRNA:   3'- acauCUCCCaCUGCGcuUGCC-GUCGc -5'
6445 3' -56.3 NC_001847.1 + 11328 0.66 0.891864
Target:  5'- cGgcGGGcGGcUGGCGCcgGAGCGGgAGCa -3'
miRNA:   3'- aCauCUC-CC-ACUGCG--CUUGCCgUCGc -5'
6445 3' -56.3 NC_001847.1 + 13816 0.66 0.891864
Target:  5'- gUGUAcGGGGGccGGCGUGuGACGGUGcGCGa -3'
miRNA:   3'- -ACAU-CUCCCa-CUGCGC-UUGCCGU-CGC- -5'
6445 3' -56.3 NC_001847.1 + 60736 0.66 0.891864
Target:  5'- ---cGAcGGGcgcgGGCGCGGcGCGGUGGCGg -3'
miRNA:   3'- acauCU-CCCa---CUGCGCU-UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 73544 0.66 0.891864
Target:  5'- uUGcGGAGGuG-GGCGCGGGCGuGUcGCGg -3'
miRNA:   3'- -ACaUCUCC-CaCUGCGCUUGC-CGuCGC- -5'
6445 3' -56.3 NC_001847.1 + 21934 0.66 0.891864
Target:  5'- --cGGAGGagagGAcCGCGGcucGCGGCGGCa -3'
miRNA:   3'- acaUCUCCca--CU-GCGCU---UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 21871 0.66 0.891864
Target:  5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3'
miRNA:   3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5'
6445 3' -56.3 NC_001847.1 + 124684 0.66 0.891864
Target:  5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3'
miRNA:   3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5'
6445 3' -56.3 NC_001847.1 + 75321 0.66 0.889838
Target:  5'- --aAG-GGGUaGGCcaccgcgcucccggGCGGGCGGCAGUGg -3'
miRNA:   3'- acaUCuCCCA-CUG--------------CGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 34834 0.66 0.885033
Target:  5'- -----cGGGcgcugGAgGCGAGCGcGCAGCGg -3'
miRNA:   3'- acaucuCCCa----CUgCGCUUGC-CGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 101791 0.66 0.885033
Target:  5'- ---uGAGGGUGAggUGCGAGgGGCccaccgucacgcAGCGc -3'
miRNA:   3'- acauCUCCCACU--GCGCUUgCCG------------UCGC- -5'
6445 3' -56.3 NC_001847.1 + 97626 0.66 0.885033
Target:  5'- cGUcGAGGGUG-CGUcca-GGCGGCGc -3'
miRNA:   3'- aCAuCUCCCACuGCGcuugCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 73746 0.66 0.877976
Target:  5'- ---cGAGGGcaguuccaaGCGcCGGGCGGCGGCGc -3'
miRNA:   3'- acauCUCCCac-------UGC-GCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 76395 0.66 0.877976
Target:  5'- --cGGGGGG-GGCGCcggGGGCcGCGGCGg -3'
miRNA:   3'- acaUCUCCCaCUGCG---CUUGcCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 27713 0.66 0.877976
Target:  5'- cGgcGGGGGcaagGGCgucaGCGGcggaagccGCGGCGGCGg -3'
miRNA:   3'- aCauCUCCCa---CUG----CGCU--------UGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.