miRNA display CGI


Results 1 - 20 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 109140 0.66 0.752875
Target:  5'- aCGCucgGUUUuuaucUCCGGgGAgccagaGCCGGCCGCGc -3'
miRNA:   3'- -GCG---CAGA-----AGGCCgCUg-----UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 80804 0.66 0.752875
Target:  5'- -aCGcCUUUaCGGCGGCGaaGGCCGCGc -3'
miRNA:   3'- gcGCaGAAG-GCCGCUGUggUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 70194 0.66 0.752875
Target:  5'- gCGCGgca--CGGCGG-ACCAGCUGCu -3'
miRNA:   3'- -GCGCagaagGCCGCUgUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 129459 0.66 0.752875
Target:  5'- cCGgGUCUg--GGCGGCcCCGGCCGg- -3'
miRNA:   3'- -GCgCAGAaggCCGCUGuGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 62483 0.66 0.752875
Target:  5'- gGgGUCg-CCGGCGGg--CGGCCGCGg -3'
miRNA:   3'- gCgCAGaaGGCCGCUgugGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 115281 0.66 0.752875
Target:  5'- gGCGggCUaagCCGGCGcCcCCGGgCGCGg -3'
miRNA:   3'- gCGCa-GAa--GGCCGCuGuGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 2471 0.66 0.752875
Target:  5'- aGCGgg---CGGCGGCGCCcccGCCGCc -3'
miRNA:   3'- gCGCagaagGCCGCUGUGGu--CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 34460 0.66 0.752875
Target:  5'- cCGCGguggCcgCCGGCGGCGaggaugcggaCGGCgGCGa -3'
miRNA:   3'- -GCGCa---GaaGGCCGCUGUg---------GUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 38022 0.66 0.752875
Target:  5'- gCGCGggugCUgUgGGCGcGCGCC-GCCGCGc -3'
miRNA:   3'- -GCGCa---GAaGgCCGC-UGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 124435 0.66 0.752875
Target:  5'- gGCGgcgCU--UGGcCGGCGCgGGCCGCGc -3'
miRNA:   3'- gCGCa--GAagGCC-GCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 63537 0.66 0.752875
Target:  5'- cCGCG-CUgCUGGCGcCGCCugGGCCgGCGc -3'
miRNA:   3'- -GCGCaGAaGGCCGCuGUGG--UCGG-CGC- -5'
6445 5' -60.1 NC_001847.1 + 21622 0.66 0.752875
Target:  5'- gGCGgcgCU--UGGcCGGCGCgGGCCGCGc -3'
miRNA:   3'- gCGCa--GAagGCC-GCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 107615 0.66 0.752875
Target:  5'- cCGcCGUUcUCgGGCGucccCGCCGccGCCGCGg -3'
miRNA:   3'- -GC-GCAGaAGgCCGCu---GUGGU--CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 97325 0.66 0.752875
Target:  5'- gCGCGUCggcgUCGcGCccGC-CCGGCCGCGu -3'
miRNA:   3'- -GCGCAGaa--GGC-CGc-UGuGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 82507 0.66 0.752875
Target:  5'- uCGCGUCUggCgCGGCGcucgcgcacGCGCCGaagucaaaggcGCCGCc -3'
miRNA:   3'- -GCGCAGAa-G-GCCGC---------UGUGGU-----------CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 65085 0.66 0.752875
Target:  5'- aGCG-CUU-CGGCGGCGaucgagaaGGCCGCGc -3'
miRNA:   3'- gCGCaGAAgGCCGCUGUgg------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 26646 0.66 0.752875
Target:  5'- cCGgGUCUg--GGCGGCcCCGGCCGg- -3'
miRNA:   3'- -GCgCAGAaggCCGCUGuGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 113937 0.66 0.752875
Target:  5'- gCGCGg--UCgCGGCGGCgucuccuacgccGCCGGgCGCGu -3'
miRNA:   3'- -GCGCagaAG-GCCGCUG------------UGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 108431 0.66 0.752875
Target:  5'- gCGCGUUc-CUGGacgugGACGCCgAGCUGCGg -3'
miRNA:   3'- -GCGCAGaaGGCCg----CUGUGG-UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 15589 0.66 0.751941
Target:  5'- cCGCagaGUCUggCCGcGCGcCccuugcccagccuGCCGGCCGCGg -3'
miRNA:   3'- -GCG---CAGAa-GGC-CGCuG-------------UGGUCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.