miRNA display CGI


Results 1 - 20 of 583 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6448 5' -60.6 NC_001847.1 + 11564 0.66 0.715752
Target:  5'- -----cCCAGCgGguGCgGCUGCCGcGg -3'
miRNA:   3'- gaagaaGGUCGgCguCGgCGGCGGC-C- -5'
6448 5' -60.6 NC_001847.1 + 123575 0.66 0.715752
Target:  5'- -----aCCGGCaccgcgGCAGCCGCaccCGCUGGg -3'
miRNA:   3'- gaagaaGGUCGg-----CGUCGGCG---GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 68152 0.66 0.715752
Target:  5'- cCUUCUccggcgCCGcGCCGCAGCCcGCCuCUGc -3'
miRNA:   3'- -GAAGAa-----GGU-CGGCGUCGG-CGGcGGCc -5'
6448 5' -60.6 NC_001847.1 + 75794 0.66 0.715752
Target:  5'- -cUCggCgCGGCgCGCGaccucGCCGCCGCCa- -3'
miRNA:   3'- gaAGaaG-GUCG-GCGU-----CGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 120798 0.66 0.715752
Target:  5'- ---gUUCC--CCGCAGgCGCCGCCa- -3'
miRNA:   3'- gaagAAGGucGGCGUCgGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 35929 0.66 0.715752
Target:  5'- --cUUUgUGGCgGCGcGCCGCCGCgCGGc -3'
miRNA:   3'- gaaGAAgGUCGgCGU-CGGCGGCG-GCC- -5'
6448 5' -60.6 NC_001847.1 + 40930 0.66 0.715752
Target:  5'- -cUUUUCguGCCGCcGCCGCagGUCGa -3'
miRNA:   3'- gaAGAAGguCGGCGuCGGCGg-CGGCc -5'
6448 5' -60.6 NC_001847.1 + 69377 0.66 0.715752
Target:  5'- -gUCUUUgCGGCgGUGG-CGCUGCCGGc -3'
miRNA:   3'- gaAGAAG-GUCGgCGUCgGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 121439 0.66 0.715752
Target:  5'- ------gCGGCC-CGaCCGCCGCCGGg -3'
miRNA:   3'- gaagaagGUCGGcGUcGGCGGCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 130273 0.66 0.715752
Target:  5'- -----cCCuGCCGCuGcCCGCCGCCc- -3'
miRNA:   3'- gaagaaGGuCGGCGuC-GGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 120970 0.66 0.715752
Target:  5'- -----cCCAGCgccgcguaagCGCGGCCGUCGCCc- -3'
miRNA:   3'- gaagaaGGUCG----------GCGUCGGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 124686 0.66 0.715752
Target:  5'- aUUCgcUCCAGCaaCGCGGCCaggggaGCCGGg -3'
miRNA:   3'- gAAGa-AGGUCG--GCGUCGGcgg---CGGCC- -5'
6448 5' -60.6 NC_001847.1 + 69649 0.66 0.715752
Target:  5'- -----cCCAGCCGC-GCCGCgacCCGGu -3'
miRNA:   3'- gaagaaGGUCGGCGuCGGCGgc-GGCC- -5'
6448 5' -60.6 NC_001847.1 + 98315 0.66 0.715752
Target:  5'- -gUCcgCCAGCCccCAGUCgGCgCGCCGGu -3'
miRNA:   3'- gaAGaaGGUCGGc-GUCGG-CG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 99778 0.66 0.715752
Target:  5'- ----cUCCAGCUGC-GCCaGCgCGCuCGGa -3'
miRNA:   3'- gaagaAGGUCGGCGuCGG-CG-GCG-GCC- -5'
6448 5' -60.6 NC_001847.1 + 103726 0.66 0.715752
Target:  5'- ----gUCC-GCCGCGGCUGCCagaCGGc -3'
miRNA:   3'- gaagaAGGuCGGCGUCGGCGGcg-GCC- -5'
6448 5' -60.6 NC_001847.1 + 108236 0.66 0.715752
Target:  5'- gCUUCUacgCCuGCCuGCAGgccaugauCCGCUGCCGc -3'
miRNA:   3'- -GAAGAa--GGuCGG-CGUC--------GGCGGCGGCc -5'
6448 5' -60.6 NC_001847.1 + 27460 0.66 0.715752
Target:  5'- -----cCCuGCCGCuGcCCGCCGCCc- -3'
miRNA:   3'- gaagaaGGuCGGCGuC-GGCGGCGGcc -5'
6448 5' -60.6 NC_001847.1 + 35485 0.66 0.715752
Target:  5'- cCUUUggggUCCGGCgCGCguuaugcucGGCgUGCgCGCCGGg -3'
miRNA:   3'- -GAAGa---AGGUCG-GCG---------UCG-GCG-GCGGCC- -5'
6448 5' -60.6 NC_001847.1 + 38279 0.66 0.715752
Target:  5'- -----cCCAG-CGCGGaCCGCCGCCc- -3'
miRNA:   3'- gaagaaGGUCgGCGUC-GGCGGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.