Results 1 - 20 of 841 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6455 | 3' | -67.8 | NC_001847.1 | + | 113169 | 0.66 | 0.423382 |
Target: 5'- aCCGCgGGCGGCaaCCGGC-GcCGcGGCCc -3' miRNA: 3'- -GGCG-CCGCCGg-GGCCGgCaGUcCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 84754 | 0.66 | 0.423382 |
Target: 5'- aCCGCaGCacgagcauGGCCaCGGCCaG-CAGGGCg -3' miRNA: 3'- -GGCGcCG--------CCGGgGCCGG-CaGUCCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 67962 | 0.66 | 0.423382 |
Target: 5'- gCCGCGGCagggGGUCgCC-GCCGagagCggGGGGCCu -3' miRNA: 3'- -GGCGCCG----CCGG-GGcCGGCa---G--UCCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 107031 | 0.66 | 0.423382 |
Target: 5'- gUCGcCGGCcucGGUCCUGGCCccgAGGGCa -3' miRNA: 3'- -GGC-GCCG---CCGGGGCCGGcagUCCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 129920 | 0.66 | 0.423382 |
Target: 5'- gCCGC-GCGcGCCCCgccGGCCGcCGcGGCg -3' miRNA: 3'- -GGCGcCGC-CGGGG---CCGGCaGUcCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 30556 | 0.66 | 0.423382 |
Target: 5'- gUCGC-GCGGCUCCGcGgCGUCuGGGaCg -3' miRNA: 3'- -GGCGcCGCCGGGGC-CgGCAGuCCCgG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 103905 | 0.66 | 0.423382 |
Target: 5'- gCCG-GGC-GCCgCGGCCG-CGGGcggcGCCg -3' miRNA: 3'- -GGCgCCGcCGGgGCCGGCaGUCC----CGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 1092 | 0.66 | 0.423382 |
Target: 5'- gCCG-GGC-GCCgCGGCCG-CGGGcggcGCCg -3' miRNA: 3'- -GGCgCCGcCGGgGCCGGCaGUCC----CGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 4218 | 0.66 | 0.423382 |
Target: 5'- gUCGcCGGCcucGGUCCUGGCCccgAGGGCa -3' miRNA: 3'- -GGC-GCCG---CCGGGGCCGGcagUCCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 27107 | 0.66 | 0.423382 |
Target: 5'- gCCGC-GCGcGCCCCgccGGCCGcCGcGGCg -3' miRNA: 3'- -GGCGcCGC-CGGGG---CCGGCaGUcCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 33847 | 0.66 | 0.423382 |
Target: 5'- gUCGCGGCGGgagagaCCgCgGGCUGg-GGGGCg -3' miRNA: 3'- -GGCGCCGCC------GG-GgCCGGCagUCCCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 28906 | 0.66 | 0.423382 |
Target: 5'- aCGUGGCGGCCUgcgUGGCCaUgAGccGCCg -3' miRNA: 3'- gGCGCCGCCGGG---GCCGGcAgUCc-CGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 64853 | 0.66 | 0.423382 |
Target: 5'- gCGCGGCGcGCCgCGacCCGcCAGGcGCg -3' miRNA: 3'- gGCGCCGC-CGGgGCc-GGCaGUCC-CGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 80549 | 0.66 | 0.423382 |
Target: 5'- gCGCgGGCGcGCgCCGccagcGCCGcccagcccgCGGGGCCg -3' miRNA: 3'- gGCG-CCGC-CGgGGC-----CGGCa--------GUCCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 124642 | 0.66 | 0.423382 |
Target: 5'- cCCGCaGCaGCgCgGgGCCGUCGGGGaagcCCa -3' miRNA: 3'- -GGCGcCGcCGgGgC-CGGCAGUCCC----GG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 129263 | 0.66 | 0.42257 |
Target: 5'- gCGCGGCcGCCCUGcgcgcagcGCUGgaccaccUCgAGGGCCa -3' miRNA: 3'- gGCGCCGcCGGGGC--------CGGC-------AG-UCCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 97145 | 0.66 | 0.418524 |
Target: 5'- aCCGUGGCcacccgGGCCuccccaaagacacugCCGGCgCG-CAcgcGGGCCa -3' miRNA: 3'- -GGCGCCG------CCGG---------------GGCCG-GCaGU---CCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 83880 | 0.66 | 0.416108 |
Target: 5'- gCCGCGGCGcuGCaucucgucacuuucaUCGGCCGgCAGcGGCg -3' miRNA: 3'- -GGCGCCGC--CGg--------------GGCCGGCaGUC-CCGg -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 24480 | 0.66 | 0.416108 |
Target: 5'- gCGCGGCagguugacgcuGGCCaaguugcacacgccgUGGgCGUCGGGGCUc -3' miRNA: 3'- gGCGCCG-----------CCGGg--------------GCCgGCAGUCCCGG- -5' |
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6455 | 3' | -67.8 | NC_001847.1 | + | 55665 | 0.66 | 0.415305 |
Target: 5'- gCGCGcCGcGCUCCGGCuCGcgCAGGcgGCCg -3' miRNA: 3'- gGCGCcGC-CGGGGCCG-GCa-GUCC--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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