miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 130600 0.66 0.866934
Target:  5'- aCGCcGCGCcaccCGCGggCGGCcgCCGCg -3'
miRNA:   3'- -GCGuCGCGcaa-GCGCuaGUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 80497 0.66 0.866934
Target:  5'- cCGCAGCGCGg-CGCug-CcGCUCgCGCa -3'
miRNA:   3'- -GCGUCGCGCaaGCGcuaGuCGAG-GUG- -5'
6474 3' -56.8 NC_001847.1 + 37691 0.66 0.866934
Target:  5'- gGCccuGGCGCGgcUGCGGcgcgCGGCUgCGCa -3'
miRNA:   3'- gCG---UCGCGCaaGCGCUa---GUCGAgGUG- -5'
6474 3' -56.8 NC_001847.1 + 104326 0.66 0.866934
Target:  5'- aGCcGCGCGUagGCGGccUCGGCg-CGCg -3'
miRNA:   3'- gCGuCGCGCAagCGCU--AGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 3075 0.66 0.866934
Target:  5'- cCGcCAGCGCGUcCgGCGcgCAGg-CCGCg -3'
miRNA:   3'- -GC-GUCGCGCAaG-CGCuaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 104532 0.66 0.866934
Target:  5'- uGCGGCGCug-CGCGG-CGGCcccggggCCGCu -3'
miRNA:   3'- gCGUCGCGcaaGCGCUaGUCGa------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 1513 0.66 0.866934
Target:  5'- aGCcGCGCGUagGCGGccUCGGCg-CGCg -3'
miRNA:   3'- gCGuCGCGCAagCGCU--AGUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 14185 0.66 0.866934
Target:  5'- aCGCGGCGCuggGUcCGCccacAUCAGCcaCCACg -3'
miRNA:   3'- -GCGUCGCG---CAaGCGc---UAGUCGa-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 105888 0.66 0.866934
Target:  5'- cCGcCAGCGCGUcCgGCGcgCAGg-CCGCg -3'
miRNA:   3'- -GC-GUCGCGCAaG-CGCuaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 33783 0.66 0.866934
Target:  5'- uGCAGgGC-UUCGCGG--GGCUgCGCg -3'
miRNA:   3'- gCGUCgCGcAAGCGCUagUCGAgGUG- -5'
6474 3' -56.8 NC_001847.1 + 61486 0.66 0.866934
Target:  5'- gGcCAGgGCGUccagguacgcCGgGAUCuGCUCCACg -3'
miRNA:   3'- gC-GUCgCGCAa---------GCgCUAGuCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 54561 0.66 0.866934
Target:  5'- gGCGGCGCGgagGaCGA-CGGCcCCGCg -3'
miRNA:   3'- gCGUCGCGCaagC-GCUaGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 40155 0.66 0.866934
Target:  5'- uCGCAGUGCGgugacugggCGUccuGGUCgcGGCUCUGCg -3'
miRNA:   3'- -GCGUCGCGCaa-------GCG---CUAG--UCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 73717 0.66 0.866934
Target:  5'- gGCGGCGCGgcCGCGGgcgucgagggcCGGCUggaggagggCCACu -3'
miRNA:   3'- gCGUCGCGCaaGCGCUa----------GUCGA---------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 120510 0.66 0.866934
Target:  5'- aGCGGCGCGcgagcgcCGCGGUCGaaaaCCACg -3'
miRNA:   3'- gCGUCGCGCaa-----GCGCUAGUcga-GGUG- -5'
6474 3' -56.8 NC_001847.1 + 44819 0.66 0.866182
Target:  5'- gGCAccGCGCcccagucggcaauGggCGCGGUCGcGCUCCAa -3'
miRNA:   3'- gCGU--CGCG-------------CaaGCGCUAGU-CGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 24880 0.66 0.866182
Target:  5'- uCGCAGCGCGUcgacucgUCccggGCGAgCAGg-CCGCg -3'
miRNA:   3'- -GCGUCGCGCA-------AG----CGCUaGUCgaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 5532 0.66 0.866182
Target:  5'- gGCGGCGaCGcUCGUGAcggCGGCccagucgucgccgUCCGCg -3'
miRNA:   3'- gCGUCGC-GCaAGCGCUa--GUCG-------------AGGUG- -5'
6474 3' -56.8 NC_001847.1 + 53889 0.66 0.866182
Target:  5'- gGCGGCGggcccccCGUccUCGCGA-CGGCcCCGCc -3'
miRNA:   3'- gCGUCGC-------GCA--AGCGCUaGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 43460 0.66 0.865428
Target:  5'- gCGaCGGCGCGgucgccgagcgCGCGAUC-GCgucccgCCGCg -3'
miRNA:   3'- -GC-GUCGCGCaa---------GCGCUAGuCGa-----GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.