miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 5' -49.4 NC_001847.1 + 58889 0.65 0.997945
Target:  5'- cUGCGGcAAgcacggcaaaugcGCCGCGGgcGGGUGUUGCGCa -3'
miRNA:   3'- aGCGCC-UU-------------UGGCGCU--UUCAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 87198 0.65 0.997869
Target:  5'- cUGCuGGAgaacAACCGCGucggguuccaacugGAAGcGCUGCGCa -3'
miRNA:   3'- aGCG-CCU----UUGGCGC--------------UUUCaUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 92000 0.66 0.997752
Target:  5'- -aGCGGAggAguuccugcucccacaGCCGCGAGAGccGCUcCACg -3'
miRNA:   3'- agCGCCU--U---------------UGGCGCUUUCa-UGAuGUG- -5'
6474 5' -49.4 NC_001847.1 + 133275 0.66 0.997586
Target:  5'- gCGCGucuAAGCCGCGc-GGUGCgcuccgGCGCa -3'
miRNA:   3'- aGCGCc--UUUGGCGCuuUCAUGa-----UGUG- -5'
6474 5' -49.4 NC_001847.1 + 102554 0.66 0.997586
Target:  5'- gCGaCGGcgGCCGCGAcuAGGcgcaGCUugGCg -3'
miRNA:   3'- aGC-GCCuuUGGCGCU--UUCa---UGAugUG- -5'
6474 5' -49.4 NC_001847.1 + 91669 0.66 0.997586
Target:  5'- cUCGCGGcugcGGCUGCGGcuGcgGCUGCGg -3'
miRNA:   3'- -AGCGCCu---UUGGCGCUuuCa-UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 89438 0.66 0.997586
Target:  5'- -gGCGGAgcugAGCCGCccaccGGAGgcCUACGCc -3'
miRNA:   3'- agCGCCU----UUGGCGc----UUUCauGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 15313 0.66 0.997586
Target:  5'- gCGuCGGggGCCGCGGgcGUaGCggggGCGg -3'
miRNA:   3'- aGC-GCCuuUGGCGCUuuCA-UGa---UGUg -5'
6474 5' -49.4 NC_001847.1 + 87267 0.66 0.997586
Target:  5'- gCGCGGgcGCgCGCGc----GCUGCGCg -3'
miRNA:   3'- aGCGCCuuUG-GCGCuuucaUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 63459 0.66 0.997586
Target:  5'- aCGCGGAcGCgGCGGGccugguugcGUACUAC-Ca -3'
miRNA:   3'- aGCGCCUuUGgCGCUUu--------CAUGAUGuG- -5'
6474 5' -49.4 NC_001847.1 + 4438 0.66 0.997586
Target:  5'- cCGCaGGGAaacgcgcacGCCGUGAAAG-GCcGCGCg -3'
miRNA:   3'- aGCG-CCUU---------UGGCGCUUUCaUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 91621 0.66 0.997586
Target:  5'- cUCGCGGcugcGGCUGCGGcuGcgGCUGCGg -3'
miRNA:   3'- -AGCGCCu---UUGGCGCUuuCa-UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 33847 0.66 0.997586
Target:  5'- gUCGCGGcgggagAGACCGCGGGcuGGgggGCggGCAg -3'
miRNA:   3'- -AGCGCC------UUUGGCGCUU--UCa--UGa-UGUg -5'
6474 5' -49.4 NC_001847.1 + 130213 0.66 0.997586
Target:  5'- gCGCGGAGGgCGCgGGAAGcGCgGCGg -3'
miRNA:   3'- aGCGCCUUUgGCG-CUUUCaUGaUGUg -5'
6474 5' -49.4 NC_001847.1 + 50279 0.66 0.997128
Target:  5'- aUCGCGGucgccucgcacGAcuacuuccaccaGCUGCgGggGGUugUGCGCa -3'
miRNA:   3'- -AGCGCC-----------UU------------UGGCG-CuuUCAugAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 30183 0.66 0.997128
Target:  5'- -gGCGGAccuGGCCGaCGc-GGUGCgcgGCGCg -3'
miRNA:   3'- agCGCCU---UUGGC-GCuuUCAUGa--UGUG- -5'
6474 5' -49.4 NC_001847.1 + 52048 0.66 0.997128
Target:  5'- -gGCGGAGGCCcgccCGGAGGUguggGCggGCACc -3'
miRNA:   3'- agCGCCUUUGGc---GCUUUCA----UGa-UGUG- -5'
6474 5' -49.4 NC_001847.1 + 95168 0.66 0.997128
Target:  5'- -gGCGGggGgCGCGAucGggg-GCGCg -3'
miRNA:   3'- agCGCCuuUgGCGCUuuCaugaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 21137 0.66 0.997128
Target:  5'- aUCGCGGucGACCuGUGGAAcGUGauguaUACGCu -3'
miRNA:   3'- -AGCGCCu-UUGG-CGCUUU-CAUg----AUGUG- -5'
6474 5' -49.4 NC_001847.1 + 111272 0.66 0.997128
Target:  5'- gCGCGc--GCUGCGAAAGcACUuuACGCg -3'
miRNA:   3'- aGCGCcuuUGGCGCUUUCaUGA--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.