miRNA display CGI


Results 1 - 20 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 50917 0.66 0.578569
Target:  5'- ----gCGCGGCCGuggaaaacgugcUCGCggagcuggaccagcaGCGGCUGCUg -3'
miRNA:   3'- ucgagGCGCCGGC------------AGCG---------------UGCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 53786 0.66 0.574688
Target:  5'- cAGCaCCGCaGCCGcCGCGaggaGGuCUGCg -3'
miRNA:   3'- -UCGaGGCGcCGGCaGCGUg---CC-GACGg -5'
6475 5' -63.4 NC_001847.1 + 84382 0.66 0.574688
Target:  5'- gGGCUCCGC-GuuGgCGCGCcaaaccggGGCaGCCg -3'
miRNA:   3'- -UCGAGGCGcCggCaGCGUG--------CCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 56863 0.66 0.574688
Target:  5'- cGC-CCgGCGGCCcggGCGCGGCcacggGCCc -3'
miRNA:   3'- uCGaGG-CGCCGGcagCGUGCCGa----CGG- -5'
6475 5' -63.4 NC_001847.1 + 66633 0.66 0.574688
Target:  5'- aAGCgcaCCGaGGuuGaguucUCGCGCGGC-GCCa -3'
miRNA:   3'- -UCGa--GGCgCCggC-----AGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 69080 0.66 0.574688
Target:  5'- cGCUcgCCGCGucuggcGCCG-CGCGCGGaCgggcggGCCg -3'
miRNA:   3'- uCGA--GGCGC------CGGCaGCGUGCC-Ga-----CGG- -5'
6475 5' -63.4 NC_001847.1 + 118910 0.66 0.574688
Target:  5'- gGGCcggggCCGaGGCCGggaCGCGgaGGCUGCa -3'
miRNA:   3'- -UCGa----GGCgCCGGCa--GCGUg-CCGACGg -5'
6475 5' -63.4 NC_001847.1 + 15932 0.66 0.574688
Target:  5'- cGCcCCGCGGUgG-C-CGCGGC-GCCg -3'
miRNA:   3'- uCGaGGCGCCGgCaGcGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 29901 0.66 0.574688
Target:  5'- cGGCcCUGcCGGCCGcCGCGgGGg-GCCc -3'
miRNA:   3'- -UCGaGGC-GCCGGCaGCGUgCCgaCGG- -5'
6475 5' -63.4 NC_001847.1 + 115110 0.66 0.574688
Target:  5'- cGC-CCaggGCGGCgGcCGCAgGGCcGCCc -3'
miRNA:   3'- uCGaGG---CGCCGgCaGCGUgCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 36069 0.66 0.574688
Target:  5'- cGUUCacagGCGcGCUGgaCGCGCGGCUGgCg -3'
miRNA:   3'- uCGAGg---CGC-CGGCa-GCGUGCCGACgG- -5'
6475 5' -63.4 NC_001847.1 + 57868 0.66 0.574688
Target:  5'- cGggUCGCcGCCGUCGCACgaGGgUGUCg -3'
miRNA:   3'- uCgaGGCGcCGGCAGCGUG--CCgACGG- -5'
6475 5' -63.4 NC_001847.1 + 39985 0.66 0.573719
Target:  5'- cGCUCUGCGcccugacgaacccGUCGUCGCGCaGCacgGCg -3'
miRNA:   3'- uCGAGGCGC-------------CGGCAGCGUGcCGa--CGg -5'
6475 5' -63.4 NC_001847.1 + 97555 0.66 0.573719
Target:  5'- cGGCcCC-CGGCCGcCGCagccgcaGCGGCcagcGCCg -3'
miRNA:   3'- -UCGaGGcGCCGGCaGCG-------UGCCGa---CGG- -5'
6475 5' -63.4 NC_001847.1 + 89804 0.66 0.568878
Target:  5'- uGGCgaacgCCGUGgcaccGCCGUggagCGCGCGGCcaacgcgcgaaacuuUGCCg -3'
miRNA:   3'- -UCGa----GGCGC-----CGGCA----GCGUGCCG---------------ACGG- -5'
6475 5' -63.4 NC_001847.1 + 134872 0.66 0.565013
Target:  5'- gGGCUCgGCGGCCccCGggcucgggcccCugGGC-GCCg -3'
miRNA:   3'- -UCGAGgCGCCGGcaGC-----------GugCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 38713 0.66 0.565013
Target:  5'- uGcCUCCGgGGCCG-CGCcugccgcCGGCcccGCCa -3'
miRNA:   3'- uC-GAGGCgCCGGCaGCGu------GCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 5894 0.66 0.565013
Target:  5'- gGGCggCCGC-GCCGUCGCAgauUGuGC-GCCc -3'
miRNA:   3'- -UCGa-GGCGcCGGCAGCGU---GC-CGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 90392 0.66 0.565013
Target:  5'- cGGCcCC-CGGCCGUaCGUGCuuguGGCggGCCa -3'
miRNA:   3'- -UCGaGGcGCCGGCA-GCGUG----CCGa-CGG- -5'
6475 5' -63.4 NC_001847.1 + 105704 0.66 0.565013
Target:  5'- cGCgCCGCGcGUCGaguacCGCGCGaGCgggGCCa -3'
miRNA:   3'- uCGaGGCGC-CGGCa----GCGUGC-CGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.