miRNA display CGI


Results 1 - 20 of 805 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 48162 0.65 0.844595
Target:  5'- gGCGCGCgccgGCcCGGccgGCGGcguccugcugugccGCGCCGGc -3'
miRNA:   3'- -UGCGCGa---CGcGCUua-UGCU--------------CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 65813 0.66 0.842202
Target:  5'- cGCuaGCUGCGCGGcugcuggcccacgGCGuGGUGUCGGa -3'
miRNA:   3'- -UGcgCGACGCGCUua-----------UGC-UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 18808 0.66 0.842202
Target:  5'- gGCGCGCgccagcGCGCGcAUgggcacggcguccucGCGcGCGCCGc -3'
miRNA:   3'- -UGCGCGa-----CGCGCuUA---------------UGCuCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 108619 0.66 0.842202
Target:  5'- aACGUGCUccGgGgGAcgGCGGGCgacgcugcagaagugGCCGGg -3'
miRNA:   3'- -UGCGCGA--CgCgCUuaUGCUCG---------------CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 69340 0.66 0.838984
Target:  5'- -gGCGCUGC-UGGcgGCGcuGGUGCUGGc -3'
miRNA:   3'- ugCGCGACGcGCUuaUGC--UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 112051 0.66 0.838984
Target:  5'- -gGCGC-GCGCGGGcUACGuagagGGCGCCc- -3'
miRNA:   3'- ugCGCGaCGCGCUU-AUGC-----UCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 72313 0.66 0.838984
Target:  5'- cGCGCGCgugGCgGUGGAcGCGGacGCGCUGc -3'
miRNA:   3'- -UGCGCGa--CG-CGCUUaUGCU--CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 6757 0.66 0.838984
Target:  5'- cUGCGgUGCgGCcGGUGCGAgGCGCCa- -3'
miRNA:   3'- uGCGCgACG-CGcUUAUGCU-CGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 60745 0.66 0.838984
Target:  5'- cGCGCGC-GCGCG---GCGGcCGCgCGGu -3'
miRNA:   3'- -UGCGCGaCGCGCuuaUGCUcGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 57448 0.66 0.838984
Target:  5'- aGCGCGC-GCGCGc--ACGccgccuugaAGCGCuCGGc -3'
miRNA:   3'- -UGCGCGaCGCGCuuaUGC---------UCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 64170 0.66 0.838984
Target:  5'- gGC-CGCuUGCGCGGAcg-GGGCGgCGGg -3'
miRNA:   3'- -UGcGCG-ACGCGCUUaugCUCGCgGCC- -5'
6476 3' -57.9 NC_001847.1 + 76699 0.66 0.838984
Target:  5'- -gGCGCUGCGgcuggaaauggcCGAcgGCGAGCucGUCGa -3'
miRNA:   3'- ugCGCGACGC------------GCUuaUGCUCG--CGGCc -5'
6476 3' -57.9 NC_001847.1 + 29536 0.66 0.838984
Target:  5'- cCGCGCgGCGCGGGcgcuCGAGUucccccGCaCGGa -3'
miRNA:   3'- uGCGCGaCGCGCUUau--GCUCG------CG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 82730 0.66 0.838984
Target:  5'- cACGCGCgggcccaGCGCcugGAGcACG-GCGCCGu -3'
miRNA:   3'- -UGCGCGa------CGCG---CUUaUGCuCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 2741 0.66 0.838984
Target:  5'- -aGCGCaGgGCGGGaGCGAGCGa-GGg -3'
miRNA:   3'- ugCGCGaCgCGCUUaUGCUCGCggCC- -5'
6476 3' -57.9 NC_001847.1 + 91813 0.66 0.838984
Target:  5'- uCGCGCcGCGCGGcgAUG-GCaGCaCGGc -3'
miRNA:   3'- uGCGCGaCGCGCUuaUGCuCG-CG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 28480 0.66 0.838984
Target:  5'- gACGCGC--CGCGGAcgccGCG-GCGCCGc -3'
miRNA:   3'- -UGCGCGacGCGCUUa---UGCuCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 97877 0.66 0.838984
Target:  5'- cGCGUcccagucgGCgGCGCGGAUgGCGAacagcGCGCCGu -3'
miRNA:   3'- -UGCG--------CGaCGCGCUUA-UGCU-----CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 70699 0.66 0.838984
Target:  5'- cGCGgGCgGCgGCGGGggcgcccgcgGCGAGCGCgaGGa -3'
miRNA:   3'- -UGCgCGaCG-CGCUUa---------UGCUCGCGg-CC- -5'
6476 3' -57.9 NC_001847.1 + 39133 0.66 0.838984
Target:  5'- gACGCGCcGCGCuGGGgcuCGAaaaucGCuGCCGGc -3'
miRNA:   3'- -UGCGCGaCGCG-CUUau-GCU-----CG-CGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.