miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 62386 0.66 0.726563
Target:  5'- cGCCGcccgacgcgucuuuaGCGCaCCCGccGGcGCUguugCCCGCGu -3'
miRNA:   3'- -CGGC---------------CGCG-GGGUuaCC-UGAa---GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 1951 0.66 0.722721
Target:  5'- cGCCGGCGCucgucCUCGccGGGCggCgCCGCc -3'
miRNA:   3'- -CGGCCGCG-----GGGUuaCCUGaaG-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 37008 0.66 0.722721
Target:  5'- cGgCGGCGCgCUCGAgcuGACg-CCCGCGg -3'
miRNA:   3'- -CgGCCGCG-GGGUUac-CUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 32131 0.66 0.722721
Target:  5'- cGCCGGCGC-----UGGGCgccgccgcgCCCGCGc -3'
miRNA:   3'- -CGGCCGCGggguuACCUGaa-------GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 36133 0.66 0.722721
Target:  5'- aGCCGcGCGCgCCGc-GGACgcgggCCUGCa -3'
miRNA:   3'- -CGGC-CGCGgGGUuaCCUGaa---GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 57333 0.66 0.722721
Target:  5'- gGCCGGCacgcGCCgcgccacguccuCCAGacauccgcgcUGGGCcUCCCGCa -3'
miRNA:   3'- -CGGCCG----CGG------------GGUU----------ACCUGaAGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 134250 0.66 0.722721
Target:  5'- gGCCGGCggccgcggcgGCCCCGGcgcGGGCcgccgCCgCGCGu -3'
miRNA:   3'- -CGGCCG----------CGGGGUUa--CCUGaa---GG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 31437 0.66 0.722721
Target:  5'- gGCCGGCggccgcggcgGCCCCGGcgcGGGCcgccgCCgCGCGu -3'
miRNA:   3'- -CGGCCG----------CGGGGUUa--CCUGaa---GG-GCGC- -5'
6477 3' -60.5 NC_001847.1 + 100911 0.66 0.722721
Target:  5'- gGUCGGgGCUCgGGUGGAaauagCCGCGg -3'
miRNA:   3'- -CGGCCgCGGGgUUACCUgaag-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 33656 0.66 0.722721
Target:  5'- aGCCGGCGCCUCGGUcG-CUagcgCgCCGCc -3'
miRNA:   3'- -CGGCCGCGGGGUUAcCuGAa---G-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 33225 0.66 0.722721
Target:  5'- gGCuUGGCGCCgCGccGGGCg--CCGCGg -3'
miRNA:   3'- -CG-GCCGCGGgGUuaCCUGaagGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 125521 0.66 0.719832
Target:  5'- gGCCGGCGCggCGGcGGGCgcagcuacggucgucCCCGCGg -3'
miRNA:   3'- -CGGCCGCGggGUUaCCUGaa-------------GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 56815 0.66 0.718867
Target:  5'- gGCCGGCGCgCCUGGgggcgcggggaggGGGCggCCCaGCc -3'
miRNA:   3'- -CGGCCGCG-GGGUUa------------CCUGaaGGG-CGc -5'
6477 3' -60.5 NC_001847.1 + 32903 0.66 0.713066
Target:  5'- cGCCGcGCGCgagcgCC--UGGACgccgUCCCGCc -3'
miRNA:   3'- -CGGC-CGCGg----GGuuACCUGa---AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 117272 0.66 0.713066
Target:  5'- -gCGGgGCCgCCGuuuugGGGCgcCCCGCGc -3'
miRNA:   3'- cgGCCgCGG-GGUua---CCUGaaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 42744 0.66 0.713066
Target:  5'- gGCUGGCGCCCCccugGGUGGccgACUacgCCaUGCu -3'
miRNA:   3'- -CGGCCGCGGGG----UUACC---UGAa--GG-GCGc -5'
6477 3' -60.5 NC_001847.1 + 87575 0.66 0.713066
Target:  5'- cUCGGCGCgugcgcggCCGccGGGCUcCCCGCGc -3'
miRNA:   3'- cGGCCGCGg-------GGUuaCCUGAaGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 39876 0.66 0.713066
Target:  5'- uGCCGGCGCCCCcgaucGCgccCCCGa- -3'
miRNA:   3'- -CGGCCGCGGGGuuaccUGaa-GGGCgc -5'
6477 3' -60.5 NC_001847.1 + 53543 0.66 0.713066
Target:  5'- cGCCGGCGgCCUcGUGcacaacGACgcUCCCGUa -3'
miRNA:   3'- -CGGCCGCgGGGuUAC------CUGa-AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 31666 0.66 0.713066
Target:  5'- cCCGcGCGCCCCGAggagcuaaGGGCgg-CCGUGu -3'
miRNA:   3'- cGGC-CGCGGGGUUa-------CCUGaagGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.