miRNA display CGI


Results 1 - 20 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 576 0.65 0.613809
Target:  5'- cGCGUcuccGGCGCCGgguccuggcccuccGCGGcCGCuccgcagcgGCGCGCg -3'
miRNA:   3'- -CGUA----CCGUGGC--------------CGCCaGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 103389 0.65 0.613809
Target:  5'- cGCGUcuccGGCGCCGgguccuggcccuccGCGGcCGCuccgcagcgGCGCGCg -3'
miRNA:   3'- -CGUA----CCGUGGC--------------CGCCaGCG---------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 91541 0.65 0.613809
Target:  5'- cCGUGGCcagcACCGGCcccagcgccacgcuGGggCGCGCGuCGCc -3'
miRNA:   3'- cGUACCG----UGGCCG--------------CCa-GCGCGC-GCGa -5'
6478 5' -62.6 NC_001847.1 + 32992 0.66 0.606912
Target:  5'- uGCGgcgGGCcgcGCCGccGUGGUCGCGCggaGUGCc -3'
miRNA:   3'- -CGUa--CCG---UGGC--CGCCAGCGCG---CGCGa -5'
6478 5' -62.6 NC_001847.1 + 4071 0.66 0.606912
Target:  5'- ---cGGUACCgaGGCGGUUGCuGC-CGCa -3'
miRNA:   3'- cguaCCGUGG--CCGCCAGCG-CGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 59516 0.66 0.606912
Target:  5'- gGCc--GCACCGGCuuGGU-GCGCuGCGCUc -3'
miRNA:   3'- -CGuacCGUGGCCG--CCAgCGCG-CGCGA- -5'
6478 5' -62.6 NC_001847.1 + 69878 0.66 0.606912
Target:  5'- aGCucgGGCucUCGGUGG-CGUGCGUGUg -3'
miRNA:   3'- -CGua-CCGu-GGCCGCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 92871 0.66 0.606912
Target:  5'- aCGUGGCGCCGcGCGaGcUCGagGUGCuGCUg -3'
miRNA:   3'- cGUACCGUGGC-CGC-C-AGCg-CGCG-CGA- -5'
6478 5' -62.6 NC_001847.1 + 33967 0.66 0.606912
Target:  5'- ---aGcGCGCUGGCGc-CGgGCGCGCUg -3'
miRNA:   3'- cguaC-CGUGGCCGCcaGCgCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 130710 0.66 0.606912
Target:  5'- gGCGUGcGCGuuucCCuGCGG-CGCGCGCuGCc -3'
miRNA:   3'- -CGUAC-CGU----GGcCGCCaGCGCGCG-CGa -5'
6478 5' -62.6 NC_001847.1 + 78700 0.66 0.606912
Target:  5'- uGCcgGGCagcacgcgaguGCgGGCGGUCuucCGCGaCGCg -3'
miRNA:   3'- -CGuaCCG-----------UGgCCGCCAGc--GCGC-GCGa -5'
6478 5' -62.6 NC_001847.1 + 31808 0.66 0.606912
Target:  5'- cCGUGGCGgUgGGCGG-CGCGgGgGCa -3'
miRNA:   3'- cGUACCGUgG-CCGCCaGCGCgCgCGa -5'
6478 5' -62.6 NC_001847.1 + 129022 0.66 0.606912
Target:  5'- -gAUGGCGgCgaGGCGcUCGCGCcGCGCc -3'
miRNA:   3'- cgUACCGUgG--CCGCcAGCGCG-CGCGa -5'
6478 5' -62.6 NC_001847.1 + 43774 0.66 0.606912
Target:  5'- uGCAUccUGCCGGUgcuGGaCGCGCGCGCc -3'
miRNA:   3'- -CGUAccGUGGCCG---CCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 107125 0.66 0.606912
Target:  5'- uGCA-GGCGCuCGuaagcGCGGcaCGcCGCGCGCUg -3'
miRNA:   3'- -CGUaCCGUG-GC-----CGCCa-GC-GCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 61277 0.66 0.606912
Target:  5'- cGCGcgGGCGCCGcGCcGcCGCcuaGCGCGCc -3'
miRNA:   3'- -CGUa-CCGUGGC-CGcCaGCG---CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 116489 0.66 0.606912
Target:  5'- cGCGggcgGGCA-CGGC-GUCGCGCuCGCc -3'
miRNA:   3'- -CGUa---CCGUgGCCGcCAGCGCGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 19338 0.66 0.606912
Target:  5'- cGCAa-GCGCCgcGGCcgGGUCuuGCGCGCGCc -3'
miRNA:   3'- -CGUacCGUGG--CCG--CCAG--CGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 111279 0.66 0.606912
Target:  5'- ---cGGCGCCGGgcCGGggGCG-GCGCUc -3'
miRNA:   3'- cguaCCGUGGCC--GCCagCGCgCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 89925 0.66 0.606912
Target:  5'- cGCGaGGCcgcgcuCgCGGCGG-CGCuCGCGCUg -3'
miRNA:   3'- -CGUaCCGu-----G-GCCGCCaGCGcGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.