Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 78067 | 0.66 | 0.800165 |
Target: 5'- -cGGCcacgaCGGCGCAGGagUCCGGGCg-- -3' miRNA: 3'- ccCCGa----GCCGCGUUUg-AGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 82440 | 0.66 | 0.800165 |
Target: 5'- -aGGuCggGGCGCuuGGCUCCAGGCg-- -3' miRNA: 3'- ccCC-GagCCGCGu-UUGAGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 125519 | 0.66 | 0.800165 |
Target: 5'- cGGGC-CGGCGCG-GCggCGGGCg-- -3' miRNA: 3'- cCCCGaGCCGCGUuUGagGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 95512 | 0.66 | 0.800165 |
Target: 5'- uGGGCcUGGCGgGcGCgCCAGGCUu- -3' miRNA: 3'- cCCCGaGCCGCgUuUGaGGUCCGAuu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 120931 | 0.66 | 0.800165 |
Target: 5'- cGGGGCggGcGCGCGGGCgugguGGCUGAu -3' miRNA: 3'- -CCCCGagC-CGCGUUUGaggu-CCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 69142 | 0.66 | 0.800165 |
Target: 5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3' miRNA: 3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 39626 | 0.66 | 0.800165 |
Target: 5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3' miRNA: 3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 39392 | 0.66 | 0.800165 |
Target: 5'- cGGGGagcCGGCGCcgg--CCGGGCUc- -3' miRNA: 3'- -CCCCga-GCCGCGuuugaGGUCCGAuu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 134642 | 0.66 | 0.800165 |
Target: 5'- gGGGGCgggcCGGCaGCAGGCgcggaggCgCGGGCa-- -3' miRNA: 3'- -CCCCGa---GCCG-CGUUUGa------G-GUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 33026 | 0.66 | 0.800165 |
Target: 5'- cGGGGCgaGGCGCGGACgcggCgCAGGa--- -3' miRNA: 3'- -CCCCGagCCGCGUUUGa---G-GUCCgauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 130462 | 0.66 | 0.794712 |
Target: 5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3' miRNA: 3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 27649 | 0.66 | 0.794712 |
Target: 5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3' miRNA: 3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 36210 | 0.66 | 0.791046 |
Target: 5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3' miRNA: 3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 73190 | 0.66 | 0.791046 |
Target: 5'- cGGGCaCGGCGC--GCgggCAGGCUGc -3' miRNA: 3'- cCCCGaGCCGCGuuUGag-GUCCGAUu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 55678 | 0.66 | 0.791046 |
Target: 5'- -cGGCUC-GCGCAGGCggCCGGGgaAAa -3' miRNA: 3'- ccCCGAGcCGCGUUUGa-GGUCCgaUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 90834 | 0.66 | 0.789204 |
Target: 5'- cGGGGCgagaucagcgagCGGCGCcccgGGGC-CgGGGCUGGu -3' miRNA: 3'- -CCCCGa-----------GCCGCG----UUUGaGgUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 15020 | 0.66 | 0.781781 |
Target: 5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3' miRNA: 3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 20656 | 0.66 | 0.781781 |
Target: 5'- aGGGGCUCagcagGGCGgAGACguccgCCAG-CUGg -3' miRNA: 3'- -CCCCGAG-----CCGCgUUUGa----GGUCcGAUu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 88248 | 0.66 | 0.781781 |
Target: 5'- -cGGCgCGGCGCgGGGCgCCGGGCg-- -3' miRNA: 3'- ccCCGaGCCGCG-UUUGaGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 96361 | 0.66 | 0.781781 |
Target: 5'- cGGGGC-CGGCGguGGCaauggCgGGGCc-- -3' miRNA: 3'- -CCCCGaGCCGCguUUGa----GgUCCGauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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