miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 33026 0.66 0.800165
Target:  5'- cGGGGCgaGGCGCGGACgcggCgCAGGa--- -3'
miRNA:   3'- -CCCCGagCCGCGUUUGa---G-GUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 125519 0.66 0.800165
Target:  5'- cGGGC-CGGCGCG-GCggCGGGCg-- -3'
miRNA:   3'- cCCCGaGCCGCGUuUGagGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 95512 0.66 0.800165
Target:  5'- uGGGCcUGGCGgGcGCgCCAGGCUu- -3'
miRNA:   3'- cCCCGaGCCGCgUuUGaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 120931 0.66 0.800165
Target:  5'- cGGGGCggGcGCGCGGGCgugguGGCUGAu -3'
miRNA:   3'- -CCCCGagC-CGCGUUUGaggu-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 69142 0.66 0.800165
Target:  5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3'
miRNA:   3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 39626 0.66 0.800165
Target:  5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 82440 0.66 0.800165
Target:  5'- -aGGuCggGGCGCuuGGCUCCAGGCg-- -3'
miRNA:   3'- ccCC-GagCCGCGu-UUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 39392 0.66 0.800165
Target:  5'- cGGGGagcCGGCGCcgg--CCGGGCUc- -3'
miRNA:   3'- -CCCCga-GCCGCGuuugaGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 78067 0.66 0.800165
Target:  5'- -cGGCcacgaCGGCGCAGGagUCCGGGCg-- -3'
miRNA:   3'- ccCCGa----GCCGCGUUUg-AGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 134642 0.66 0.800165
Target:  5'- gGGGGCgggcCGGCaGCAGGCgcggaggCgCGGGCa-- -3'
miRNA:   3'- -CCCCGa---GCCG-CGUUUGa------G-GUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130462 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 27649 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 36210 0.66 0.791046
Target:  5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3'
miRNA:   3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 73190 0.66 0.791046
Target:  5'- cGGGCaCGGCGC--GCgggCAGGCUGc -3'
miRNA:   3'- cCCCGaGCCGCGuuUGag-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 55678 0.66 0.791046
Target:  5'- -cGGCUC-GCGCAGGCggCCGGGgaAAa -3'
miRNA:   3'- ccCCGAGcCGCGUUUGa-GGUCCgaUU- -5'
6479 3' -57.8 NC_001847.1 + 90834 0.66 0.789204
Target:  5'- cGGGGCgagaucagcgagCGGCGCcccgGGGC-CgGGGCUGGu -3'
miRNA:   3'- -CCCCGa-----------GCCGCG----UUUGaGgUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 88248 0.66 0.781781
Target:  5'- -cGGCgCGGCGCgGGGCgCCGGGCg-- -3'
miRNA:   3'- ccCCGaGCCGCG-UUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 96361 0.66 0.781781
Target:  5'- cGGGGC-CGGCGguGGCaauggCgGGGCc-- -3'
miRNA:   3'- -CCCCGaGCCGCguUUGa----GgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 20656 0.66 0.781781
Target:  5'- aGGGGCUCagcagGGCGgAGACguccgCCAG-CUGg -3'
miRNA:   3'- -CCCCGAG-----CCGCgUUUGa----GGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 15020 0.66 0.781781
Target:  5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3'
miRNA:   3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.