miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 133163 0.66 0.335719
Target:  5'- -aCCCGCUG-CCCggggaGGCgCUgGCGGCGc -3'
miRNA:   3'- cgGGGCGGCuGGG-----CCGgGGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 123474 0.66 0.335719
Target:  5'- gGCCgCCGCgGGCUCGGCuggggCCgCCGCaaGCGg -3'
miRNA:   3'- -CGG-GGCGgCUGGGCCG-----GG-GGCGc-CGC- -5'
6480 5' -70.3 NC_001847.1 + 74111 0.66 0.335719
Target:  5'- aCCgCUGCCGGuuCCCGGCCguggugcugCgCGUGGCGc -3'
miRNA:   3'- cGG-GGCGGCU--GGGCCGG---------GgGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 121248 0.66 0.335719
Target:  5'- aGCCaCCGUCGuggcACUgGGCUCCCGgccaaaGGCGc -3'
miRNA:   3'- -CGG-GGCGGC----UGGgCCGGGGGCg-----CCGC- -5'
6480 5' -70.3 NC_001847.1 + 66190 0.66 0.335719
Target:  5'- cGCCCCcucuuCCGcAUCgGcGCCgCCCaGCGGCGg -3'
miRNA:   3'- -CGGGGc----GGC-UGGgC-CGG-GGG-CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133543 0.66 0.335719
Target:  5'- cGCagugCGCCGcGCgCUGGCCCgaGCGGCGc -3'
miRNA:   3'- -CGgg--GCGGC-UG-GGCCGGGggCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 102821 0.66 0.335719
Target:  5'- cGCCgCGCCG-CgCgGGCCCCCuGCGa-- -3'
miRNA:   3'- -CGGgGCGGCuG-GgCCGGGGG-CGCcgc -5'
6480 5' -70.3 NC_001847.1 + 48126 0.66 0.335719
Target:  5'- uGUCCCGCgaGGCgCGGCCCagguaaCCGCcgGGCc -3'
miRNA:   3'- -CGGGGCGg-CUGgGCCGGG------GGCG--CCGc -5'
6480 5' -70.3 NC_001847.1 + 23464 0.66 0.335719
Target:  5'- cGCgUCCGCCGcCUCGGCCaUCGCgcucGGCGc -3'
miRNA:   3'- -CG-GGGCGGCuGGGCCGGgGGCG----CCGC- -5'
6480 5' -70.3 NC_001847.1 + 125553 0.66 0.335719
Target:  5'- uCCCCGCggcugcggcuCGAUCgCGGCCgCgGgCGGCGg -3'
miRNA:   3'- cGGGGCG----------GCUGG-GCCGGgGgC-GCCGC- -5'
6480 5' -70.3 NC_001847.1 + 130738 0.66 0.335719
Target:  5'- uGCCgCCGUCGGCgucgaCGGCggcgaCCGUGGCGc -3'
miRNA:   3'- -CGG-GGCGGCUGg----GCCGgg---GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 13271 0.66 0.335719
Target:  5'- uGCUgaCUGCgGugCCGGCCCUgUGCGcGCGc -3'
miRNA:   3'- -CGG--GGCGgCugGGCCGGGG-GCGC-CGC- -5'
6480 5' -70.3 NC_001847.1 + 105097 0.66 0.335719
Target:  5'- aGCCgCCGUCGGCggcggGGCCgCCG-GGCGg -3'
miRNA:   3'- -CGG-GGCGGCUGgg---CCGGgGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 15398 0.66 0.335719
Target:  5'- cUUCCGCCaGCUgggCGGCCCUggagCGCGGCa -3'
miRNA:   3'- cGGGGCGGcUGG---GCCGGGG----GCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 77437 0.66 0.335719
Target:  5'- uGCCCgacacgGUCGagaGCgCGGCaCCCGCGGCGc -3'
miRNA:   3'- -CGGGg-----CGGC---UGgGCCGgGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 8 0.66 0.335719
Target:  5'- cGCCgCGCCG-CgCgGGCCCCCuGCGa-- -3'
miRNA:   3'- -CGGgGCGGCuG-GgCCGGGGG-CGCcgc -5'
6480 5' -70.3 NC_001847.1 + 101043 0.66 0.335719
Target:  5'- gGCUCCGCCGccGCgCGaGCCaCgGCGGCc -3'
miRNA:   3'- -CGGGGCGGC--UGgGC-CGGgGgCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 131246 0.66 0.335719
Target:  5'- cGCCCgCGCUGGCUa---CgCCGCGGCGc -3'
miRNA:   3'- -CGGG-GCGGCUGGgccgGgGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 30350 0.66 0.335719
Target:  5'- -aCCCGCUG-CCCggggaGGCgCUgGCGGCGc -3'
miRNA:   3'- cgGGGCGGCuGGG-----CCGgGGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 28433 0.66 0.335719
Target:  5'- cGCCCgCGCUGGCUa---CgCCGCGGCGc -3'
miRNA:   3'- -CGGG-GCGGCUGGgccgGgGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.