miRNA display CGI


Results 1 - 20 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 94076 0.66 0.550556
Target:  5'- aCCCuGCGGGAcu-UGCUGCCCG-UGCa -3'
miRNA:   3'- -GGGuCGUCCUaccGCGGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 59931 0.66 0.550556
Target:  5'- gCCGGCGGaagGGCGCCacgcaagcGUCCGgCGUg -3'
miRNA:   3'- gGGUCGUCcuaCCGCGG--------CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 105726 0.66 0.550556
Target:  5'- gCgAGCGGGGccacgguccGCGCCGCCagcgcgGCCGCn -3'
miRNA:   3'- gGgUCGUCCUac-------CGCGGCGGg-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 112712 0.66 0.550556
Target:  5'- gCCCGaccGCGuGGucucgGGCcCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU---CGU-CCua---CCGcGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 86413 0.66 0.550556
Target:  5'- gCgCAGCucguGGAUuuguuggcGGCGCUGCgCGgCGCg -3'
miRNA:   3'- -GgGUCGu---CCUA--------CCGCGGCGgGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 30896 0.66 0.550556
Target:  5'- gCCCGGCcgcagcccGGuGA-GGCGCgCGCCgGCgGUg -3'
miRNA:   3'- -GGGUCG--------UC-CUaCCGCG-GCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 115608 0.66 0.550556
Target:  5'- -gCGGCuuGGAguccGGCuGCCGUuuCUGCCGCa -3'
miRNA:   3'- ggGUCGu-CCUa---CCG-CGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 54523 0.66 0.550556
Target:  5'- -gCGGUGGGgcGGgGCCGUCCGggggCGCa -3'
miRNA:   3'- ggGUCGUCCuaCCgCGGCGGGCg---GCG- -5'
6481 5' -64.2 NC_001847.1 + 59240 0.66 0.550556
Target:  5'- gCCGuCGGcGAUGGCGCCGgCCaggGCCa- -3'
miRNA:   3'- gGGUcGUC-CUACCGCGGCgGG---CGGcg -5'
6481 5' -64.2 NC_001847.1 + 21859 0.66 0.550556
Target:  5'- -gCAGCAGGuggugcgggGGCuGCgGCgCGCUGCc -3'
miRNA:   3'- ggGUCGUCCua-------CCG-CGgCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 92619 0.66 0.550556
Target:  5'- aCCgAGCAgcuuuuccacGGAcGGCGCgcccggcgguuuCGCCCGCaGCg -3'
miRNA:   3'- -GGgUCGU----------CCUaCCGCG------------GCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 125522 0.66 0.550556
Target:  5'- gCCGGCGcggcGGcgGGCGCagcuacgguCGUCC-CCGCg -3'
miRNA:   3'- gGGUCGU----CCuaCCGCG---------GCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 111337 0.66 0.550556
Target:  5'- gCgAGCAGuGGUcGGUgGCCGCCgCGCUGg -3'
miRNA:   3'- gGgUCGUC-CUA-CCG-CGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 131500 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 49248 0.66 0.550556
Target:  5'- aCgCGGCucgccuGGAccucgacaagcUcGCGCUGCUCGCCGCg -3'
miRNA:   3'- -GgGUCGu-----CCU-----------AcCGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 71488 0.66 0.550556
Target:  5'- gCCCGGCAacGGUGGCgGCgGUgCGCgGUg -3'
miRNA:   3'- -GGGUCGUc-CUACCG-CGgCGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 89670 0.66 0.550556
Target:  5'- uCCCgAGCAcgcGcGAcUGGCGCgCGCUauuugcgcgCGCCGCg -3'
miRNA:   3'- -GGG-UCGU---C-CU-ACCGCG-GCGG---------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 115500 0.66 0.550556
Target:  5'- cCCCu---GGAagGGCGCCGCgCCuauCCGCa -3'
miRNA:   3'- -GGGucguCCUa-CCGCGGCG-GGc--GGCG- -5'
6481 5' -64.2 NC_001847.1 + 33339 0.66 0.550556
Target:  5'- uCgCGGCcuGGGUGGCGCUGCUgcacgaGgCGCa -3'
miRNA:   3'- -GgGUCGu-CCUACCGCGGCGGg-----CgGCG- -5'
6481 5' -64.2 NC_001847.1 + 10420 0.66 0.550556
Target:  5'- cCCCGcGCGGuucGcGCuGCCGCCC-CCGCg -3'
miRNA:   3'- -GGGU-CGUCcuaC-CG-CGGCGGGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.