miRNA display CGI


Results 41 - 60 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 2467 0.78 0.099217
Target:  5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3'
miRNA:   3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55459 0.77 0.101734
Target:  5'- gCCGGCGGGgcGcGCGCCGCgCUaGCCGCu -3'
miRNA:   3'- gGGUCGUCCuaC-CGCGGCG-GG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55510 0.77 0.104312
Target:  5'- gCCCuGCugc-UGGCGgCGCCCGCCGCg -3'
miRNA:   3'- -GGGuCGuccuACCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 101624 0.77 0.106951
Target:  5'- gCCCGGCGccuccgcGGCGgCGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUccua---CCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 106758 0.77 0.106951
Target:  5'- gCCgCGGCGGGGggGGCGCCGUcuCCGgCGCg -3'
miRNA:   3'- -GG-GUCGUCCUa-CCGCGGCG--GGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 93467 0.77 0.108564
Target:  5'- cCCCAGCAGGAUcuccuugaagaGCCGCgUGCCGCg -3'
miRNA:   3'- -GGGUCGUCCUAccg--------CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 57155 0.77 0.109652
Target:  5'- -aCAGCAGGgcGcGCucGCCGCCCGCCaGCa -3'
miRNA:   3'- ggGUCGUCCuaC-CG--CGGCGGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 45260 0.77 0.109652
Target:  5'- gCCGGCGuGAgcgcGGCGaaGCCCGCCGCg -3'
miRNA:   3'- gGGUCGUcCUa---CCGCggCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9812 0.77 0.112418
Target:  5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 112625 0.77 0.112418
Target:  5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3'
miRNA:   3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 13118 0.77 0.112418
Target:  5'- gCCGgggcgcGCGGGcgGcgccGCGCCGCCUGCCGCg -3'
miRNA:   3'- gGGU------CGUCCuaC----CGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2442 0.77 0.115248
Target:  5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3'
miRNA:   3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 58203 0.77 0.115248
Target:  5'- gCCAGCAGGcgcuccgGGCGgauCUGCCCGCCGg -3'
miRNA:   3'- gGGUCGUCCua-----CCGC---GGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 105255 0.77 0.115248
Target:  5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3'
miRNA:   3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132177 0.77 0.115248
Target:  5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 29364 0.77 0.115248
Target:  5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 36532 0.76 0.118145
Target:  5'- cCCCGcuuGCGGGGUGccGCGCCGCCCaagcGCCGg -3'
miRNA:   3'- -GGGU---CGUCCUAC--CGCGGCGGG----CGGCg -5'
6481 5' -64.2 NC_001847.1 + 33875 0.76 0.12111
Target:  5'- uUCUuGCAGGA-GGCGCCGCCgcgcgugGCCGCg -3'
miRNA:   3'- -GGGuCGUCCUaCCGCGGCGGg------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 87410 0.76 0.12111
Target:  5'- ---cGCGGGcggGGCcCCGCCCGCCGCg -3'
miRNA:   3'- ggguCGUCCua-CCGcGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 112324 0.76 0.12111
Target:  5'- cCUCGGCGGGGagcGGcCGCCGCCgGcCCGCa -3'
miRNA:   3'- -GGGUCGUCCUa--CC-GCGGCGGgC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.