miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 126645 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 634 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 75800 0.66 0.99014
Target:  5'- -------gCCGCUCCgCCCCCGAugccGGGCu -3'
miRNA:   3'- gcuuuaaaGGCGGGG-GGGGGUU----UUUG- -5'
6482 3' -51.2 NC_001847.1 + 34047 0.66 0.99014
Target:  5'- gCGAAcgcgcCCGCCCgCCCCgCCGAc--- -3'
miRNA:   3'- -GCUUuaaa-GGCGGG-GGGG-GGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 23832 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 114615 0.66 0.99014
Target:  5'- aGAAGUUcacgUCCuuccaguggGCCCCCgCCCgCGAcGACg -3'
miRNA:   3'- gCUUUAA----AGG---------CGGGGG-GGG-GUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 135086 0.66 0.99014
Target:  5'- -------cCCGCCCCCgCCCGcc-GCa -3'
miRNA:   3'- gcuuuaaaGGCGGGGGgGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 75980 0.66 0.99014
Target:  5'- -------aCCGCCgCCCCCUGGccAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 89038 0.66 0.99014
Target:  5'- -------aUCGCCCagCCCCCgCGGAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG--GGGGG-GUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103447 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 112725 0.66 0.988748
Target:  5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3'
miRNA:   3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 48646 0.66 0.988748
Target:  5'- gCGggGcg-CCGCCgCCCCCgCAGc--- -3'
miRNA:   3'- -GCuuUaaaGGCGGgGGGGG-GUUuuug -5'
6482 3' -51.2 NC_001847.1 + 39607 0.66 0.988748
Target:  5'- gCGGcg---CgGCCCCagCCCCAGGGGCa -3'
miRNA:   3'- -GCUuuaaaGgCGGGGg-GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 126533 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 9912 0.66 0.988748
Target:  5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3'
miRNA:   3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 118001 0.66 0.988748
Target:  5'- -------aCCGCCCaCCCgCCCAAccuGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG-GGG-GGGUUuu-UG- -5'
6482 3' -51.2 NC_001847.1 + 23720 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 39982 0.66 0.988748
Target:  5'- cCGA----UCgCGCCCCCCgCCAugccGGCa -3'
miRNA:   3'- -GCUuuaaAG-GCGGGGGGgGGUuu--UUG- -5'
6482 3' -51.2 NC_001847.1 + 119384 0.66 0.987842
Target:  5'- gCGAAAgcgggCCGCCCgcgucggcauaggcgCCCUCCAGGuuGCg -3'
miRNA:   3'- -GCUUUaaa--GGCGGG---------------GGGGGGUUUu-UG- -5'
6482 3' -51.2 NC_001847.1 + 102203 0.66 0.987208
Target:  5'- ------cUCCGCCCCCccggCCCCGc---- -3'
miRNA:   3'- gcuuuaaAGGCGGGGG----GGGGUuuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.