miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 103447 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103055 0.68 0.949685
Target:  5'- ---cGUUUCCcCCCuCCCCCCAAu--- -3'
miRNA:   3'- gcuuUAAAGGcGGG-GGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 103021 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103001 0.69 0.935447
Target:  5'- cCGggGcccCCGCCCCCgCCCCc----- -3'
miRNA:   3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 102718 0.66 0.981603
Target:  5'- gCGAAAggcCCGCaCCCCCcggcugCCCcAAGGCg -3'
miRNA:   3'- -GCUUUaaaGGCG-GGGGG------GGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 102359 0.67 0.96813
Target:  5'- ------gUCCGCCCccggcccuCCCCCCAcagggaucuccucGAAGCa -3'
miRNA:   3'- gcuuuaaAGGCGGG--------GGGGGGU-------------UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 102203 0.66 0.987208
Target:  5'- ------cUCCGCCCCCccggCCCCGc---- -3'
miRNA:   3'- gcuuuaaAGGCGGGGG----GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 101283 0.67 0.976956
Target:  5'- -------aCUGCCCgCCCCCCAGcccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG-GGGGGGUUuu-UG- -5'
6482 3' -51.2 NC_001847.1 + 100722 0.7 0.912843
Target:  5'- cCGAAGUacuucUUCCGCCgCCCCCagcgccGCg -3'
miRNA:   3'- -GCUUUA-----AAGGCGGgGGGGGguuuu-UG- -5'
6482 3' -51.2 NC_001847.1 + 99851 0.67 0.976956
Target:  5'- -------cCCGCCCCCgCCCAc---- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGgGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 98305 0.67 0.971499
Target:  5'- cCGAGcgcacgUCCGCCagCCCCCAGucGGCg -3'
miRNA:   3'- -GCUUuaa---AGGCGGggGGGGGUUu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 97984 0.69 0.935447
Target:  5'- aCGAGGUg-CCGCUUCCcggccgCCCCAAAGGCc -3'
miRNA:   3'- -GCUUUAaaGGCGGGGG------GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 97270 0.67 0.978909
Target:  5'- uCGAGcgccagcagCCGCUCCCCCCaCGAGu-- -3'
miRNA:   3'- -GCUUuaaa-----GGCGGGGGGGG-GUUUuug -5'
6482 3' -51.2 NC_001847.1 + 97131 0.67 0.975407
Target:  5'- gCGuguagUCCGCCaCCguggccacccgggccUCCCCAAAGACa -3'
miRNA:   3'- -GCuuuaaAGGCGG-GG---------------GGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 96650 0.68 0.96517
Target:  5'- -------aCCGCgCCgCCCCCCGGcGACg -3'
miRNA:   3'- gcuuuaaaGGCG-GG-GGGGGGUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 94327 0.69 0.923529
Target:  5'- cCGGGuggugcaGCUCCCCCCCGAAuACg -3'
miRNA:   3'- -GCUUuaaagg-CGGGGGGGGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 92520 0.71 0.855527
Target:  5'- uCGGcgcugCCGCCCCCCUCCGc-GGCg -3'
miRNA:   3'- -GCUuuaaaGGCGGGGGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 92191 0.69 0.930186
Target:  5'- -------cCCGCCCCCCCCgCGcgcGGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGG-GUuu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 89038 0.66 0.99014
Target:  5'- -------aUCGCCCagCCCCCgCGGAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG--GGGGG-GUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 88625 0.72 0.84731
Target:  5'- -------gCCGCCgCCCCCCGAGcGCu -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUUUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.