miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 115274 0.66 0.416762
Target:  5'- uGGcGGUgGCGGGcuaaGCCgGCGCccccgGGCGCg -3'
miRNA:   3'- -CC-CCAgCGUCCcc--CGGgCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33842 0.66 0.416762
Target:  5'- uGGGaGUCGCGGcGGGaGagaCCGCG-GGCu- -3'
miRNA:   3'- -CCC-CAGCGUC-CCC-Cg--GGCGCgCCGcg -5'
6482 5' -67.7 NC_001847.1 + 43658 0.66 0.416762
Target:  5'- aGGG-CuCGGGuGGCCCGCcGCaGGUGCu -3'
miRNA:   3'- cCCCaGcGUCCcCCGGGCG-CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28081 0.66 0.416762
Target:  5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3'
miRNA:   3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 80822 0.66 0.416762
Target:  5'- -aGGcCGCgcgccgcgacugGGGGGGCagauCCGgGCGGCGg -3'
miRNA:   3'- ccCCaGCG------------UCCCCCG----GGCgCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 10111 0.66 0.416762
Target:  5'- cGGGGaaagccgccuUCGCGGcgagcGGGCCCGgcCGUaGCGCg -3'
miRNA:   3'- -CCCC----------AGCGUCc----CCCGGGC--GCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 85159 0.66 0.416762
Target:  5'- cGGGcuccucUCGCGGaGGgcgugcacGGCCUGCGCguacucGGCGCc -3'
miRNA:   3'- cCCC------AGCGUC-CC--------CCGGGCGCG------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74433 0.66 0.416762
Target:  5'- uGGaGGUCGUGGcGGcGCacgaCGcCGUGGCGCu -3'
miRNA:   3'- -CC-CCAGCGUCcCC-CGg---GC-GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130894 0.66 0.416762
Target:  5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3'
miRNA:   3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33501 0.66 0.415953
Target:  5'- cGGcGG-CGCGGGcggcggcGGGCgCCGCcGCggaGGCGCc -3'
miRNA:   3'- -CC-CCaGCGUCC-------CCCG-GGCG-CG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14793 0.66 0.415953
Target:  5'- cGGcGUacaaaacCGCAGcGGcGGagCUGCGCGGCGCc -3'
miRNA:   3'- cCC-CA-------GCGUC-CC-CCg-GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 105112 0.66 0.414338
Target:  5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3'
miRNA:   3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 2299 0.66 0.414338
Target:  5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3'
miRNA:   3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 131231 0.66 0.408715
Target:  5'- cGGGcgCGCAaccGGcGCCCGCgcuggcuacgccGCGGCGCc -3'
miRNA:   3'- cCCCa-GCGUcc-CC-CGGGCG------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 114107 0.66 0.408715
Target:  5'- gGGGGUCuCGGGGcaagcuuGCUCGCaCGcGCGCu -3'
miRNA:   3'- -CCCCAGcGUCCCc------CGGGCGcGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 42599 0.66 0.408715
Target:  5'- gGGGGUgGUgacAGGGacGGCgCCGCcgcggagggggGCGGCaGCg -3'
miRNA:   3'- -CCCCAgCG---UCCC--CCG-GGCG-----------CGCCG-CG- -5'
6482 5' -67.7 NC_001847.1 + 84817 0.66 0.408715
Target:  5'- cGGca-GCccGGGGGCCUGCGU-GCGCa -3'
miRNA:   3'- cCCcagCGu-CCCCCGGGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 80751 0.66 0.408715
Target:  5'- --cGUCGUGGacuuGGUCCGCGcCGGCGCg -3'
miRNA:   3'- cccCAGCGUCcc--CCGGGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 51530 0.66 0.408715
Target:  5'- cGGcagGCGGGGGcggcGCCCagGCGuCGGCGCa -3'
miRNA:   3'- cCCcagCGUCCCC----CGGG--CGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130727 0.66 0.408715
Target:  5'- aGGGGgcggaggCGCGGaGGacgcggacagcGCCUGggcCGCGGCGCg -3'
miRNA:   3'- -CCCCa------GCGUCcCC-----------CGGGC---GCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.