Results 1 - 20 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6482 | 5' | -67.7 | NC_001847.1 | + | 74433 | 0.66 | 0.416762 |
Target: 5'- uGGaGGUCGUGGcGGcGCacgaCGcCGUGGCGCu -3' miRNA: 3'- -CC-CCAGCGUCcCC-CGg---GC-GCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 115274 | 0.66 | 0.416762 |
Target: 5'- uGGcGGUgGCGGGcuaaGCCgGCGCccccgGGCGCg -3' miRNA: 3'- -CC-CCAgCGUCCcc--CGGgCGCG-----CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 28081 | 0.66 | 0.416762 |
Target: 5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3' miRNA: 3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 43658 | 0.66 | 0.416762 |
Target: 5'- aGGG-CuCGGGuGGCCCGCcGCaGGUGCu -3' miRNA: 3'- cCCCaGcGUCCcCCGGGCG-CG-CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 130894 | 0.66 | 0.416762 |
Target: 5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3' miRNA: 3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 33842 | 0.66 | 0.416762 |
Target: 5'- uGGGaGUCGCGGcGGGaGagaCCGCG-GGCu- -3' miRNA: 3'- -CCC-CAGCGUC-CCC-Cg--GGCGCgCCGcg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 80822 | 0.66 | 0.416762 |
Target: 5'- -aGGcCGCgcgccgcgacugGGGGGGCagauCCGgGCGGCGg -3' miRNA: 3'- ccCCaGCG------------UCCCCCG----GGCgCGCCGCg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 85159 | 0.66 | 0.416762 |
Target: 5'- cGGGcuccucUCGCGGaGGgcgugcacGGCCUGCGCguacucGGCGCc -3' miRNA: 3'- cCCC------AGCGUC-CC--------CCGGGCGCG------CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 10111 | 0.66 | 0.416762 |
Target: 5'- cGGGGaaagccgccuUCGCGGcgagcGGGCCCGgcCGUaGCGCg -3' miRNA: 3'- -CCCC----------AGCGUCc----CCCGGGC--GCGcCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 14793 | 0.66 | 0.415953 |
Target: 5'- cGGcGUacaaaacCGCAGcGGcGGagCUGCGCGGCGCc -3' miRNA: 3'- cCC-CA-------GCGUC-CC-CCg-GGCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 33501 | 0.66 | 0.415953 |
Target: 5'- cGGcGG-CGCGGGcggcggcGGGCgCCGCcGCggaGGCGCc -3' miRNA: 3'- -CC-CCaGCGUCC-------CCCG-GGCG-CG---CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 105112 | 0.66 | 0.414338 |
Target: 5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3' miRNA: 3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 2299 | 0.66 | 0.414338 |
Target: 5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3' miRNA: 3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 42599 | 0.66 | 0.408715 |
Target: 5'- gGGGGUgGUgacAGGGacGGCgCCGCcgcggagggggGCGGCaGCg -3' miRNA: 3'- -CCCCAgCG---UCCC--CCG-GGCG-----------CGCCG-CG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 114107 | 0.66 | 0.408715 |
Target: 5'- gGGGGUCuCGGGGcaagcuuGCUCGCaCGcGCGCu -3' miRNA: 3'- -CCCCAGcGUCCCc------CGGGCGcGC-CGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 131231 | 0.66 | 0.408715 |
Target: 5'- cGGGcgCGCAaccGGcGCCCGCgcuggcuacgccGCGGCGCc -3' miRNA: 3'- cCCCa-GCGUcc-CC-CGGGCG------------CGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 84817 | 0.66 | 0.408715 |
Target: 5'- cGGca-GCccGGGGGCCUGCGU-GCGCa -3' miRNA: 3'- cCCcagCGu-CCCCCGGGCGCGcCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 130727 | 0.66 | 0.408715 |
Target: 5'- aGGGGgcggaggCGCGGaGGacgcggacagcGCCUGggcCGCGGCGCg -3' miRNA: 3'- -CCCCa------GCGUCcCC-----------CGGGC---GCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 51530 | 0.66 | 0.408715 |
Target: 5'- cGGcagGCGGGGGcggcGCCCagGCGuCGGCGCa -3' miRNA: 3'- cCCcagCGUCCCC----CGGG--CGC-GCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 80751 | 0.66 | 0.408715 |
Target: 5'- --cGUCGUGGacuuGGUCCGCGcCGGCGCg -3' miRNA: 3'- cccCAGCGUCcc--CCGGGCGC-GCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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