miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 118470 0.66 0.99976
Target:  5'- gCCUGC-GGCGCAAG---GCccgGGCg -3'
miRNA:   3'- gGGGCGaCCGCGUUUuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 14049 0.66 0.99976
Target:  5'- aCCgUCGC-GGCGCAGAGcgcaaGCAGcAGCa -3'
miRNA:   3'- -GG-GGCGaCCGCGUUUUua---UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 15540 0.66 0.99976
Target:  5'- -gCUGCUGGCGCc--GGUGCGcgcGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 103277 0.66 0.99976
Target:  5'- gCUCCGCcGGCaGCAAcgccgGCGAgcccgGGCg -3'
miRNA:   3'- -GGGGCGaCCG-CGUUuuua-UGUUa----UCG- -5'
6487 3' -47.4 NC_001847.1 + 54940 0.66 0.99976
Target:  5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 3141 0.66 0.99976
Target:  5'- gCCCCGCgagcaGCGUGGAGcaGCAGUuaacGCa -3'
miRNA:   3'- -GGGGCGac---CGCGUUUUuaUGUUAu---CG- -5'
6487 3' -47.4 NC_001847.1 + 36183 0.66 0.99976
Target:  5'- aCCCCuacGCcgUGGCGCGugggcucgcugAAGAUAUAA-GGCg -3'
miRNA:   3'- -GGGG---CG--ACCGCGU-----------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 81963 0.66 0.99976
Target:  5'- -aCCGCgGGCGCGcucaucACGcgGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuuuua-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 104000 0.66 0.99976
Target:  5'- gCCCGCgaaGGCcagccGCAGAA--ACGAcAGCg -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 82304 0.66 0.99976
Target:  5'- -aCCGg-GGCGgGAGAAUGCG--GGCg -3'
miRNA:   3'- ggGGCgaCCGCgUUUUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 69959 0.66 0.99976
Target:  5'- gUCCGCgGGCGCGAccAUAaacucCAGaGGCa -3'
miRNA:   3'- gGGGCGaCCGCGUUuuUAU-----GUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 121967 0.66 0.99976
Target:  5'- gUCCGgUGGCGUGAAc-UGC-GUGGCu -3'
miRNA:   3'- gGGGCgACCGCGUUUuuAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 14943 0.66 0.999748
Target:  5'- -aCCGCUGGCuGCuguGGUucauggacgccuCGAUGGCa -3'
miRNA:   3'- ggGGCGACCG-CGuuuUUAu-----------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 1431 0.66 0.999736
Target:  5'- gCCCCGCcaggcacuauuuGCGCucGGGUGCAuugAGCu -3'
miRNA:   3'- -GGGGCGac----------CGCGuuUUUAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 51228 0.66 0.999722
Target:  5'- gCCCUGCUcgcgGGCGCGccgcugccggccgauGAAAgugACGAgauGCa -3'
miRNA:   3'- -GGGGCGA----CCGCGU---------------UUUUa--UGUUau-CG- -5'
6487 3' -47.4 NC_001847.1 + 11334 0.66 0.999694
Target:  5'- -gCgGCUGGCGCcGGA--GCGggAGCa -3'
miRNA:   3'- ggGgCGACCGCGuUUUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 1980 0.66 0.999694
Target:  5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 20042 0.66 0.999694
Target:  5'- gCCgCCGCccugGGCGCGggcaAAAAUGCGcucGCu -3'
miRNA:   3'- -GG-GGCGa---CCGCGU----UUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 132321 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.