miRNA display CGI

Results 1 - 20 of 1253 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6489	5'	-64.1	NC_001847.1	+	59291	0.65	0.58099
	Target:  5'- cGGCGggaaACCGUacccagggugccaGGgCGCGG-CGCCGGCGg -3' miRNA:   3'- -CCGC----UGGCG-------------CUgGCGCUgGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	30879	0.65	0.58099
	Target:  5'- uGGCGuuugcgccagucGCC-CGGCCGCaGCCcggugaggcgcgcGCCGGCGg -3' miRNA:   3'- -CCGC------------UGGcGCUGGCGcUGG-------------CGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	35485	0.65	0.58099
	Target:  5'- aGGCGGCaaagGCGGCgCGCGcggaggccacggcGCgCGCCGaGCGc -3' miRNA:   3'- -CCGCUGg---CGCUG-GCGC-------------UG-GCGGC-CGU- -5'
6489	5'	-64.1	NC_001847.1	+	106695	0.65	0.57908
	Target:  5'- cGGCGGCCauaggcacuuuccaGuUGGCgGCGugCGCCagGGCGc -3' miRNA:   3'- -CCGCUGG--------------C-GCUGgCGCugGCGG--CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	114433	0.65	0.57908
	Target:  5'- cGGCGGCaacggcaacccaauCGCGAgCGCcucgcuuaucGGCCGCCagcuGGCGg -3' miRNA:   3'- -CCGCUG--------------GCGCUgGCG----------CUGGCGG----CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	43079	0.66	0.576216
	Target:  5'- gGGCG-CUGCuGGCUcgGCGGCggaggcgcccggaggCGCCGGCGg -3' miRNA:   3'- -CCGCuGGCG-CUGG--CGCUG---------------GCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	22025	0.66	0.576216
	Target:  5'- cGGCGACCGUGgaagcGCacaGCGugCGCaugaaguauacaucuCGGUAc -3' miRNA:   3'- -CCGCUGGCGC-----UGg--CGCugGCG---------------GCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	97104	0.66	0.576216
	Target:  5'- cGGCGGCgCGguUGGCCGCGAgaaacugcguguaguCCGCCaccguGGCc -3' miRNA:   3'- -CCGCUG-GC--GCUGGCGCU---------------GGCGG-----CCGu -5'
6489	5'	-64.1	NC_001847.1	+	128650	0.66	0.576216
	Target:  5'- cGGCGacGCCGCuaccuacgaccugcaGGCCGUgcggGACUGCCuGGCc -3' miRNA:   3'- -CCGC--UGGCG---------------CUGGCG----CUGGCGG-CCGu -5'
6489	5'	-64.1	NC_001847.1	+	71912	0.66	0.572403
	Target:  5'- cGGCgGACC-CGGCgCGCGGCgCGCgcacgcguaaaCGGCGc -3' miRNA:   3'- -CCG-CUGGcGCUG-GCGCUG-GCG-----------GCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	34524	0.66	0.572403
	Target:  5'- cGGCGcCgGCGAUgCGcCGcCCGCCgGGCGc -3' miRNA:   3'- -CCGCuGgCGCUG-GC-GCuGGCGG-CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	76785	0.66	0.572403
	Target:  5'- aGGcCGAcgucCCGCGccugGCCGCccuCUGCUGGCAg -3' miRNA:   3'- -CC-GCU----GGCGC----UGGCGcu-GGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	84981	0.66	0.572403
	Target:  5'- cGGCGGCgagGCagaaGACCGUca-CGCCGGCGa -3' miRNA:   3'- -CCGCUGg--CG----CUGGCGcugGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	55461	0.66	0.572403
	Target:  5'- cGGCgGGgCGCGcGCCGCGcuaGCCGCUgcccugcuaugGGCGa -3' miRNA:   3'- -CCG-CUgGCGC-UGGCGC---UGGCGG-----------CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	9664	0.66	0.572403
	Target:  5'- gGGCGuccUCGCGcccGCCGCGagcuGCCGCCGa-- -3' miRNA:   3'- -CCGCu--GGCGC---UGGCGC----UGGCGGCcgu -5'
6489	5'	-64.1	NC_001847.1	+	47026	0.66	0.572403
	Target:  5'- uGGCGcgcgacACCGUGauuccggccaGCCGCGccACCGCCGaCAg -3' miRNA:   3'- -CCGC------UGGCGC----------UGGCGC--UGGCGGCcGU- -5'
6489	5'	-64.1	NC_001847.1	+	16240	0.66	0.572403
	Target:  5'- cGGCcucGGCCcCGGCCcCGGCC-CCGGCc -3' miRNA:   3'- -CCG---CUGGcGCUGGcGCUGGcGGCCGu -5'
6489	5'	-64.1	NC_001847.1	+	12209	0.66	0.572403
	Target:  5'- aGCGAuuauuuuaCUGCuaACCGCGGCCccaaucacggcGCCGGCGa -3' miRNA:   3'- cCGCU--------GGCGc-UGGCGCUGG-----------CGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	55065	0.66	0.572403
	Target:  5'- aGCuGGCCGCGuuuauGCUgGCGGCCGCgGGgGg -3' miRNA:   3'- cCG-CUGGCGC-----UGG-CGCUGGCGgCCgU- -5'
6489	5'	-64.1	NC_001847.1	+	100880	0.66	0.572403
	Target:  5'- cGGCGGCaGgGG-CGCGGCCGgCGGgAg -3' miRNA:   3'- -CCGCUGgCgCUgGCGCUGGCgGCCgU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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