miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 78095 0.66 0.728114
Target:  5'- aGCUUAG-CCGCCuCgGCCcACagGGCGc -3'
miRNA:   3'- -CGAAUCgGGCGGuGgCGGuUGg-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 78512 0.66 0.728114
Target:  5'- cCUcGGCCgGCUGCuCGCgCGGCUGGUGu -3'
miRNA:   3'- cGAaUCGGgCGGUG-GCG-GUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 48666 0.66 0.728114
Target:  5'- ---cAGCCUcgucguccguGCCGCCGUCGGCgccguCGGCGu -3'
miRNA:   3'- cgaaUCGGG----------CGGUGGCGGUUG-----GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 131898 0.66 0.728114
Target:  5'- ----nGCCCcuGCCGCCgGCgAGCaCGGCGc -3'
miRNA:   3'- cgaauCGGG--CGGUGG-CGgUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 15539 0.66 0.728114
Target:  5'- cGCg-GGCCuCGUCGUCGCCGGgUGGCGc -3'
miRNA:   3'- -CGaaUCGG-GCGGUGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 109343 0.66 0.728114
Target:  5'- ---aAGCCUggGCCACaGCCG-CCGGUGc -3'
miRNA:   3'- cgaaUCGGG--CGGUGgCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 5643 0.66 0.728114
Target:  5'- cGCgccaaagAGCCCGUCcagcggaugcgcGCCGUCGcGCgCGGCGg -3'
miRNA:   3'- -CGaa-----UCGGGCGG------------UGGCGGU-UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 36956 0.66 0.728114
Target:  5'- aGCgggGGCUgcgGCCAgCGCgGgcGCCGGCGa -3'
miRNA:   3'- -CGaa-UCGGg--CGGUgGCGgU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 77303 0.66 0.728114
Target:  5'- ---aGGCCCGCaCACUGaCCGAgUGGUu -3'
miRNA:   3'- cgaaUCGGGCG-GUGGC-GGUUgGCCGc -5'
6490 3' -60.3 NC_001847.1 + 104972 0.66 0.728114
Target:  5'- gGCcaGGUCCGCCGagCGCCAcgcacccagggcGCaCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGGUg-GCGGU------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 18337 0.66 0.728114
Target:  5'- gGCUgcaGGCgCGUUACCGUCGG-CGGCa -3'
miRNA:   3'- -CGAa--UCGgGCGGUGGCGGUUgGCCGc -5'
6490 3' -60.3 NC_001847.1 + 134249 0.66 0.728114
Target:  5'- ---cGGCCgGCgGCCGCgGcggccCCGGCGc -3'
miRNA:   3'- cgaaUCGGgCGgUGGCGgUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 102470 0.66 0.728114
Target:  5'- aGCUcgagcgGGCCCG-CGCCGCCGgcGCCGu-- -3'
miRNA:   3'- -CGAa-----UCGGGCgGUGGCGGU--UGGCcgc -5'
6490 3' -60.3 NC_001847.1 + 7348 0.66 0.728114
Target:  5'- aGCgguggUAGCCgucaGCgCGCUGCU-GCCGGCGc -3'
miRNA:   3'- -CGa----AUCGGg---CG-GUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2888 0.66 0.728114
Target:  5'- gGCcgGGUgCGUCGCCGUUcgGGCCGGaCGg -3'
miRNA:   3'- -CGaaUCGgGCGGUGGCGG--UUGGCC-GC- -5'
6490 3' -60.3 NC_001847.1 + 69412 0.66 0.728114
Target:  5'- ---gGGCCCGgCGCUGUuccugcggcuCAGCgCGGCGg -3'
miRNA:   3'- cgaaUCGGGCgGUGGCG----------GUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 96485 0.66 0.728114
Target:  5'- gGCggcgGGCgUCGCCACgG-CAACgCGGCGg -3'
miRNA:   3'- -CGaa--UCG-GGCGGUGgCgGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 79645 0.66 0.728114
Target:  5'- ----cGCUCGCCGCCGaaCCAcuGCCGGa- -3'
miRNA:   3'- cgaauCGGGCGGUGGC--GGU--UGGCCgc -5'
6490 3' -60.3 NC_001847.1 + 104032 0.66 0.728114
Target:  5'- aGCUccAGCgCgCGCCGCCcgcagGCCAgguacACCGGCc -3'
miRNA:   3'- -CGAa-UCG-G-GCGGUGG-----CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2409 0.66 0.728114
Target:  5'- gGCcgUGGCUCGCUgcGCCGCU--UCGGCc -3'
miRNA:   3'- -CGa-AUCGGGCGG--UGGCGGuuGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.