miRNA display CGI


Results 1 - 20 of 707 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 5' -61.5 NC_001847.1 + 132601 0.66 0.639976
Target:  5'- cAGCCcgccggagaGCAGCGGUcCCGCGGcccggcagcaaaGCGCg- -3'
miRNA:   3'- cUCGG---------CGUCGCCGaGGCGCU------------UGCGag -5'
6491 5' -61.5 NC_001847.1 + 48478 0.66 0.639976
Target:  5'- aAGCgCGCGGCGaGCUCCGagaaGAGCa--- -3'
miRNA:   3'- cUCG-GCGUCGC-CGAGGCg---CUUGcgag -5'
6491 5' -61.5 NC_001847.1 + 61330 0.66 0.639976
Target:  5'- cAGCCGCugcagcGCGGCgaccaCgGCGuGCGCUUc -3'
miRNA:   3'- cUCGGCGu-----CGCCGa----GgCGCuUGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 32194 0.66 0.639976
Target:  5'- cGGCCGgGGCccgaGGC-CCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCgUCG----CCGaGGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 41387 0.66 0.639976
Target:  5'- cGGGCCGCcGcCGGCagCCGCGcGGC-CUCc -3'
miRNA:   3'- -CUCGGCGuC-GCCGa-GGCGC-UUGcGAG- -5'
6491 5' -61.5 NC_001847.1 + 80152 0.66 0.639976
Target:  5'- -cGCgGUguuuGGCGGCUgCGCGAaguugugcGCGCUg -3'
miRNA:   3'- cuCGgCG----UCGCCGAgGCGCU--------UGCGAg -5'
6491 5' -61.5 NC_001847.1 + 77345 0.66 0.639976
Target:  5'- -cGCUGCugGGCGGCgacacgCCGUGcGACGCg- -3'
miRNA:   3'- cuCGGCG--UCGCCGa-----GGCGC-UUGCGag -5'
6491 5' -61.5 NC_001847.1 + 73858 0.66 0.639976
Target:  5'- -cGCCGCcGCGGUg-CGCgGGGCGCgUCa -3'
miRNA:   3'- cuCGGCGuCGCCGagGCG-CUUGCG-AG- -5'
6491 5' -61.5 NC_001847.1 + 60478 0.66 0.639976
Target:  5'- -uGCCGCGGCucggccGGCUCCagGCGcAGCaGCUg -3'
miRNA:   3'- cuCGGCGUCG------CCGAGG--CGC-UUG-CGAg -5'
6491 5' -61.5 NC_001847.1 + 104004 0.66 0.639976
Target:  5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3'
miRNA:   3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 57295 0.66 0.639976
Target:  5'- cGAGCUGCuGcCGGg-CCGCGA--GCUCg -3'
miRNA:   3'- -CUCGGCGuC-GCCgaGGCGCUugCGAG- -5'
6491 5' -61.5 NC_001847.1 + 135007 0.66 0.639976
Target:  5'- cGGCCGgGGCccgaGGC-CCGCGGGCGg-- -3'
miRNA:   3'- cUCGGCgUCG----CCGaGGCGCUUGCgag -5'
6491 5' -61.5 NC_001847.1 + 46201 0.66 0.639976
Target:  5'- cGGCCgGCGGCGGCcgCCGcCGGGCcgGC-Cg -3'
miRNA:   3'- cUCGG-CGUCGCCGa-GGC-GCUUG--CGaG- -5'
6491 5' -61.5 NC_001847.1 + 76507 0.66 0.639976
Target:  5'- gGAGcCCGUguucGCGGCcuacguccCCGCGGGCGCg- -3'
miRNA:   3'- -CUC-GGCGu---CGCCGa-------GGCGCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 58457 0.66 0.639976
Target:  5'- cAGCCGCAGCG---CCGCGcGCGUg- -3'
miRNA:   3'- cUCGGCGUCGCcgaGGCGCuUGCGag -5'
6491 5' -61.5 NC_001847.1 + 114737 0.66 0.639976
Target:  5'- cGGGaCCGguGcCGGCggucgcggUCGCGGuCGCUCu -3'
miRNA:   3'- -CUC-GGCguC-GCCGa-------GGCGCUuGCGAG- -5'
6491 5' -61.5 NC_001847.1 + 104885 0.66 0.639976
Target:  5'- -cGCCGCGGCGcGCUgcaacgccgCCaGCGAcACGCg- -3'
miRNA:   3'- cuCGGCGUCGC-CGA---------GG-CGCU-UGCGag -5'
6491 5' -61.5 NC_001847.1 + 1191 0.66 0.639976
Target:  5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3'
miRNA:   3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5'
6491 5' -61.5 NC_001847.1 + 34176 0.66 0.639976
Target:  5'- uGAGgCGCuGCGGg-CCGgGGGCGCg- -3'
miRNA:   3'- -CUCgGCGuCGCCgaGGCgCUUGCGag -5'
6491 5' -61.5 NC_001847.1 + 70511 0.66 0.638972
Target:  5'- cGGGCaucaaGCAGCGGCUgCUggGCGGcgugcugGCGCUg -3'
miRNA:   3'- -CUCGg----CGUCGCCGA-GG--CGCU-------UGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.