Results 1 - 20 of 707 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6491 | 5' | -61.5 | NC_001847.1 | + | 485 | 0.66 | 0.609873 |
Target: 5'- cAGCgGCGGCGGCggggcggCCGC--GCGC-Ca -3' miRNA: 3'- cUCGgCGUCGCCGa------GGCGcuUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 614 | 0.67 | 0.521121 |
Target: 5'- --uCCGCAGCGGCg-CGCGGcccGCGcCUCc -3' miRNA: 3'- cucGGCGUCGCCGagGCGCU---UGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 671 | 0.66 | 0.589873 |
Target: 5'- aGAGCCGCAcuCGGa-CCGCGugUGUUCg -3' miRNA: 3'- -CUCGGCGUc-GCCgaGGCGCuuGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 994 | 0.71 | 0.347285 |
Target: 5'- -cGCCGCGGCGGCg--GCacGCGCUCc -3' miRNA: 3'- cuCGGCGUCGCCGaggCGcuUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1021 | 0.67 | 0.560109 |
Target: 5'- aGGCCGCcgcccGCGGCgcgCCGCagcagcacGAGCGuCUCc -3' miRNA: 3'- cUCGGCGu----CGCCGa--GGCG--------CUUGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1103 | 0.7 | 0.394988 |
Target: 5'- cGGCCGCgGGCGGCgccgCCGCGG-C-CUCc -3' miRNA: 3'- cUCGGCG-UCGCCGa---GGCGCUuGcGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1191 | 0.66 | 0.639976 |
Target: 5'- -cGCCGCGGcCGGCagcUCGuCGGGCGC-Ca -3' miRNA: 3'- cuCGGCGUC-GCCGa--GGC-GCUUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1254 | 0.7 | 0.390031 |
Target: 5'- cGGCCGCAGCGGCgcgccgagcCCccagcgguuggcggcGCGGugGCUg -3' miRNA: 3'- cUCGGCGUCGCCGa--------GG---------------CGCUugCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1484 | 0.74 | 0.229753 |
Target: 5'- aGAGCCGCAGCGGCggcgCCuCGGgguagagccGCGCg- -3' miRNA: 3'- -CUCGGCGUCGCCGa---GGcGCU---------UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1624 | 0.7 | 0.370613 |
Target: 5'- -cGCCGCGGCaGCaCCGCGGcGCGCa- -3' miRNA: 3'- cuCGGCGUCGcCGaGGCGCU-UGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1881 | 0.67 | 0.550277 |
Target: 5'- cAGCaGCAGcCGGUUgcccagcgCCGCGAGCGCg- -3' miRNA: 3'- cUCGgCGUC-GCCGA--------GGCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1919 | 0.74 | 0.229753 |
Target: 5'- aGAGCCcgccgcggcGCGGCGGCcacucgggCCGCcGGCGCUCg -3' miRNA: 3'- -CUCGG---------CGUCGCCGa-------GGCGcUUGCGAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 1967 | 0.66 | 0.609873 |
Target: 5'- -cGCCG-GGCGGCgCCGCcAGCGcCUCc -3' miRNA: 3'- cuCGGCgUCGCCGaGGCGcUUGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2067 | 0.78 | 0.114484 |
Target: 5'- -cGCCGCAGCGGUggCgGCGAGCGCc- -3' miRNA: 3'- cuCGGCGUCGCCGa-GgCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2096 | 0.75 | 0.198779 |
Target: 5'- gGGGCCcgcGCGGCGGCgggCCGCGAucucggccaGCGcCUCg -3' miRNA: 3'- -CUCGG---CGUCGCCGa--GGCGCU---------UGC-GAG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2184 | 0.7 | 0.394988 |
Target: 5'- -cGCCGCcugGGCGGCg-UGCGGGCGCa- -3' miRNA: 3'- cuCGGCG---UCGCCGagGCGCUUGCGag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2191 | 0.69 | 0.455712 |
Target: 5'- cGAGCCGCgccgcgaccucggGGCGGCaguaggccgccagcgCCGCG-GCGCUg -3' miRNA: 3'- -CUCGGCG-------------UCGCCGa--------------GGCGCuUGCGAg -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2287 | 0.67 | 0.521121 |
Target: 5'- -cGCCGuCGGCGGCggggCCGcCGGGCGg-- -3' miRNA: 3'- cuCGGC-GUCGCCGa---GGC-GCUUGCgag -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2335 | 0.69 | 0.446726 |
Target: 5'- cGGGCaGCGGCGGCUCcCGCc-GCGC-Cg -3' miRNA: 3'- -CUCGgCGUCGCCGAG-GCGcuUGCGaG- -5' |
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6491 | 5' | -61.5 | NC_001847.1 | + | 2357 | 0.72 | 0.276638 |
Target: 5'- cGGGCCGCAugagguccagucGCGcGC-CCGCGAagacggcggugacGCGCUCg -3' miRNA: 3'- -CUCGGCGU------------CGC-CGaGGCGCU-------------UGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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