miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 74991 0.66 0.830937
Target:  5'- gGGCGccaGGCUcagUCcGCCGGCGggcgGGGGGCc -3'
miRNA:   3'- -UCGUa--UCGG---AGcCGGUCGCa---UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 47337 0.66 0.830937
Target:  5'- aAGC--GGUUUUGGCCcGCGUcgaagacgcggaAGAGGCc -3'
miRNA:   3'- -UCGuaUCGGAGCCGGuCGCA------------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 29895 0.66 0.830937
Target:  5'- aGGCGgcGGCCcugcCGGCCGccGCG-GGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGa---GCCGGU--CGCaUCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 69243 0.66 0.830937
Target:  5'- cGGCAacgcUGGCCUacuacgcgCGGCUGGCGgcGgccgcGGGCu -3'
miRNA:   3'- -UCGU----AUCGGA--------GCCGGUCGCauC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 5383 0.66 0.830937
Target:  5'- cGGCGgu-CCgagCGGCCGGCGgcacAGGCc -3'
miRNA:   3'- -UCGUaucGGa--GCCGGUCGCauc-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 45855 0.66 0.830937
Target:  5'- cGGCcgaGGCCUCGGCC-GCGgcGc-GCg -3'
miRNA:   3'- -UCGua-UCGGAGCCGGuCGCauCucCG- -5'
6492 5' -57.4 NC_001847.1 + 34235 0.66 0.830937
Target:  5'- uGCA-GGCCcaguacgCGGCgCGGCGc-GAGGCg -3'
miRNA:   3'- uCGUaUCGGa------GCCG-GUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 116112 0.66 0.830937
Target:  5'- gGGCugcuucucGGCCuuUCGGCCGGgCGcuGGGGCg -3'
miRNA:   3'- -UCGua------UCGG--AGCCGGUC-GCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 103689 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8053 0.66 0.830937
Target:  5'- -cCAaAGCCgcgCGGCCcGCGcgcagagGGGGGCa -3'
miRNA:   3'- ucGUaUCGGa--GCCGGuCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 8384 0.66 0.830937
Target:  5'- cAGCGUgGGCgUCuGCC-GCGUAGgcuacGGGCa -3'
miRNA:   3'- -UCGUA-UCGgAGcCGGuCGCAUC-----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 876 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 53603 0.66 0.830937
Target:  5'- uGCG-GGCCacggUGGCgGGCGgcGGGGUg -3'
miRNA:   3'- uCGUaUCGGa---GCCGgUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 66114 0.66 0.82242
Target:  5'- uGCAUGGCCUCuuuccGCCuggacuuGCucgaGGAGGCg -3'
miRNA:   3'- uCGUAUCGGAGc----CGGu------CGca--UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 105090 0.66 0.82242
Target:  5'- cGGCGgaAGCCgccGUCGGCGgcGGGGCc -3'
miRNA:   3'- -UCGUa-UCGGagcCGGUCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 47217 0.66 0.82242
Target:  5'- cGCAgGGCCuccUCGGCCacGGCGUugAGcuuguagcuGGGCa -3'
miRNA:   3'- uCGUaUCGG---AGCCGG--UCGCA--UC---------UCCG- -5'
6492 5' -57.4 NC_001847.1 + 37169 0.66 0.82242
Target:  5'- uGGCGgucaacAGCCUCGcGCCGGgagagcccgGUGcGAGGCg -3'
miRNA:   3'- -UCGUa-----UCGGAGC-CGGUCg--------CAU-CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 28851 0.66 0.82242
Target:  5'- cGCGcGGCCgcgCGcgcgacGCCGGCGgcgcuGGGGCg -3'
miRNA:   3'- uCGUaUCGGa--GC------CGGUCGCau---CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 45288 0.66 0.82242
Target:  5'- cGGCGagccGGCCUUGcaGCCGGCGgucGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGAGC--CGGUCGCau-C-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 18613 0.66 0.82242
Target:  5'- cGC--GGCgUCGGCgCGcGCGUAGcgcAGGCa -3'
miRNA:   3'- uCGuaUCGgAGCCG-GU-CGCAUC---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.