miRNA display CGI


Results 1 - 20 of 356 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 5' -60.4 NC_001847.1 + 133213 0.66 0.730587
Target:  5'- cGGCgg-CCCGAGuggccGCCGCGCCGcGGc -3'
miRNA:   3'- cCCGaugGGGCUC-----CGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 120470 0.66 0.730587
Target:  5'- -cGCcGCgCCGccGGCCGCGCCGucGAu -3'
miRNA:   3'- ccCGaUGgGGCu-CCGGCGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 18561 0.66 0.730587
Target:  5'- gGGGCUcggugaccGgCCCGuGuGCCGCGCCaAAGu -3'
miRNA:   3'- -CCCGA--------UgGGGCuC-CGGCGUGGcUUCu -5'
6493 5' -60.4 NC_001847.1 + 5729 0.66 0.730587
Target:  5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3'
miRNA:   3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5'
6493 5' -60.4 NC_001847.1 + 79239 0.66 0.730587
Target:  5'- cGGGCgcgcuCCCCGA-GCUGCuaGCCGgcGu -3'
miRNA:   3'- -CCCGau---GGGGCUcCGGCG--UGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 30400 0.66 0.730587
Target:  5'- cGGCgg-CCCGAGuggccGCCGCGCCGcGGc -3'
miRNA:   3'- cCCGaugGGGCUC-----CGGCGUGGCuUCu -5'
6493 5' -60.4 NC_001847.1 + 108542 0.66 0.730587
Target:  5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3'
miRNA:   3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5'
6493 5' -60.4 NC_001847.1 + 60041 0.66 0.730587
Target:  5'- cGGGCaaGCgCCGGGGCgC-CGCCGAcGAu -3'
miRNA:   3'- -CCCGa-UGgGGCUCCG-GcGUGGCUuCU- -5'
6493 5' -60.4 NC_001847.1 + 79521 0.66 0.730587
Target:  5'- gGGGCUggcgGCgUCGucGCCGUcgggGCCGggGGg -3'
miRNA:   3'- -CCCGA----UGgGGCucCGGCG----UGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 96091 0.66 0.730587
Target:  5'- uGGCggaGCCggagUCGGGGCCGgaGCCGGAGu -3'
miRNA:   3'- cCCGa--UGG----GGCUCCGGCg-UGGCUUCu -5'
6493 5' -60.4 NC_001847.1 + 106450 0.66 0.730587
Target:  5'- nGGGU--CCCgGuAGGCCaGCGCCGccGAu -3'
miRNA:   3'- -CCCGauGGGgC-UCCGG-CGUGGCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 28219 0.66 0.720985
Target:  5'- gGGGCgagGCCCgGgaGGGgaGCACCGAc-- -3'
miRNA:   3'- -CCCGa--UGGGgC--UCCggCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 32956 0.66 0.720985
Target:  5'- gGGGCggaggagGCCgggGAGGCCagagGCGCCGggGc -3'
miRNA:   3'- -CCCGa------UGGgg-CUCCGG----CGUGGCuuCu -5'
6493 5' -60.4 NC_001847.1 + 131032 0.66 0.720985
Target:  5'- gGGGCgagGCCCgGgaGGGgaGCACCGAc-- -3'
miRNA:   3'- -CCCGa--UGGGgC--UCCggCGUGGCUucu -5'
6493 5' -60.4 NC_001847.1 + 90550 0.66 0.720985
Target:  5'- uGGCgGCCCUc--GCCGCGCgCGAGGGc -3'
miRNA:   3'- cCCGaUGGGGcucCGGCGUG-GCUUCU- -5'
6493 5' -60.4 NC_001847.1 + 45512 0.66 0.720985
Target:  5'- cGGGCgccGCCgCCG-GGCgGCGCgGAcgGGGc -3'
miRNA:   3'- -CCCGa--UGG-GGCuCCGgCGUGgCU--UCU- -5'
6493 5' -60.4 NC_001847.1 + 84222 0.66 0.720985
Target:  5'- aGGCccugACggCCGGGGCCGCcGCgGggGAg -3'
miRNA:   3'- cCCGa---UGg-GGCUCCGGCG-UGgCuuCU- -5'
6493 5' -60.4 NC_001847.1 + 65820 0.66 0.720985
Target:  5'- -aGCaGCgCCCGAGGcCCGCGCCcaaAAGGc -3'
miRNA:   3'- ccCGaUG-GGGCUCC-GGCGUGGc--UUCU- -5'
6493 5' -60.4 NC_001847.1 + 36015 0.66 0.720985
Target:  5'- cGGGCgugGUgCUGGGGCUGCGCgCGGAcGAg -3'
miRNA:   3'- -CCCGa--UGgGGCUCCGGCGUG-GCUU-CU- -5'
6493 5' -60.4 NC_001847.1 + 13949 0.66 0.720985
Target:  5'- gGGGCcGCCCCGcgcaAGuGCCGCcCCGc--- -3'
miRNA:   3'- -CCCGaUGGGGC----UC-CGGCGuGGCuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.