Results 1 - 20 of 600 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6494 | 3' | -56.5 | NC_001847.1 | + | 58305 | 0.66 | 0.885033 |
Target: 5'- aUGUuuGGCGC--GCGgugGCUCCgGCACCg -3' miRNA: 3'- gACG--CCGCGaaUGCaa-CGGGG-UGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 84115 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGUcgUGCagccgaUGCCgCCGCaACCg -3' miRNA: 3'- gaCGCCGCGa-AUGca----ACGG-GGUG-UGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 96193 | 0.66 | 0.885033 |
Target: 5'- -cGCcauGGCGCUcGCGgc-CCCCGgGCCc -3' miRNA: 3'- gaCG---CCGCGAaUGCaacGGGGUgUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 77289 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGacccgACag-GCCCgCACACUg -3' miRNA: 3'- gaCGCCGCgaa--UGcaaCGGG-GUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 80546 | 0.66 | 0.885033 |
Target: 5'- --uCGGCGCggGCGcgcGCCgCCAgCGCCg -3' miRNA: 3'- gacGCCGCGaaUGCaa-CGG-GGU-GUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 37248 | 0.66 | 0.885033 |
Target: 5'- -gGaCGGCGCgc-UGUUcGCCauCCGCGCCg -3' miRNA: 3'- gaC-GCCGCGaauGCAA-CGG--GGUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 62413 | 0.66 | 0.885033 |
Target: 5'- -cGcCGGCGCUguugcccGCGUgccugcUGCCgCC-CACCg -3' miRNA: 3'- gaC-GCCGCGAa------UGCA------ACGG-GGuGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 104939 | 0.66 | 0.885033 |
Target: 5'- -cGCGGCuucgGCgcGCGc-GCCgCGCACCg -3' miRNA: 3'- gaCGCCG----CGaaUGCaaCGGgGUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 31165 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGUcgACGccgcgcuggGCgCCgACGCCa -3' miRNA: 3'- gaCGCCGCGaaUGCaa-------CG-GGgUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 82444 | 0.66 | 0.885033 |
Target: 5'- -cGgGGCGCUUggcuccaggcGCGgcggGCCCgGCcCCg -3' miRNA: 3'- gaCgCCGCGAA----------UGCaa--CGGGgUGuGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 47422 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGuCUgcgACGUcgucgGCUUCGcCGCCg -3' miRNA: 3'- gaCGCCGC-GAa--UGCAa----CGGGGU-GUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 95296 | 0.66 | 0.885033 |
Target: 5'- uUGCGGcCGCUgGCGccuccagGCgCgGCGCCg -3' miRNA: 3'- gACGCC-GCGAaUGCaa-----CGgGgUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 44937 | 0.66 | 0.885033 |
Target: 5'- gCUGgGGCGCUcgggcugggcgACGgcGCgCCGCAgCa -3' miRNA: 3'- -GACgCCGCGAa----------UGCaaCGgGGUGUgG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 75731 | 0.66 | 0.885033 |
Target: 5'- -cGgGGCGCa-GCGaUGaCCgCCGCGCCu -3' miRNA: 3'- gaCgCCGCGaaUGCaAC-GG-GGUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 16851 | 0.66 | 0.885033 |
Target: 5'- -gGCGGCGCUcgagGCGagcggGCUCCuggagagacauCACCa -3' miRNA: 3'- gaCGCCGCGAa---UGCaa---CGGGGu----------GUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 126272 | 0.66 | 0.885033 |
Target: 5'- -cGCuGGCGCUc-UGggGCCCaauuGCGCCa -3' miRNA: 3'- gaCG-CCGCGAauGCaaCGGGg---UGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 48742 | 0.66 | 0.885033 |
Target: 5'- -gGCGGUGCagUAUGacucaGCCgCGCGCCc -3' miRNA: 3'- gaCGCCGCGa-AUGCaa---CGGgGUGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 96422 | 0.66 | 0.885033 |
Target: 5'- -gGCGGgGCcgGCGgcaggcgcgGCCCCggagGCACUg -3' miRNA: 3'- gaCGCCgCGaaUGCaa-------CGGGG----UGUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 75658 | 0.66 | 0.885033 |
Target: 5'- ---aGGCGCggGCGUUGCUCgugaAgGCCg -3' miRNA: 3'- gacgCCGCGaaUGCAACGGGg---UgUGG- -5' |
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6494 | 3' | -56.5 | NC_001847.1 | + | 66821 | 0.66 | 0.884338 |
Target: 5'- -aGCGGCGCgUUcugcaccuguuugACG-UGCCCacgauCACCa -3' miRNA: 3'- gaCGCCGCG-AA-------------UGCaACGGGgu---GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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