miRNA display CGI


Results 1 - 20 of 600 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 58305 0.66 0.885033
Target:  5'- aUGUuuGGCGC--GCGgugGCUCCgGCACCg -3'
miRNA:   3'- gACG--CCGCGaaUGCaa-CGGGG-UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 84115 0.66 0.885033
Target:  5'- -gGCGGCGUcgUGCagccgaUGCCgCCGCaACCg -3'
miRNA:   3'- gaCGCCGCGa-AUGca----ACGG-GGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 96193 0.66 0.885033
Target:  5'- -cGCcauGGCGCUcGCGgc-CCCCGgGCCc -3'
miRNA:   3'- gaCG---CCGCGAaUGCaacGGGGUgUGG- -5'
6494 3' -56.5 NC_001847.1 + 77289 0.66 0.885033
Target:  5'- -gGCGGCGacccgACag-GCCCgCACACUg -3'
miRNA:   3'- gaCGCCGCgaa--UGcaaCGGG-GUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 80546 0.66 0.885033
Target:  5'- --uCGGCGCggGCGcgcGCCgCCAgCGCCg -3'
miRNA:   3'- gacGCCGCGaaUGCaa-CGG-GGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 37248 0.66 0.885033
Target:  5'- -gGaCGGCGCgc-UGUUcGCCauCCGCGCCg -3'
miRNA:   3'- gaC-GCCGCGaauGCAA-CGG--GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 62413 0.66 0.885033
Target:  5'- -cGcCGGCGCUguugcccGCGUgccugcUGCCgCC-CACCg -3'
miRNA:   3'- gaC-GCCGCGAa------UGCA------ACGG-GGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 104939 0.66 0.885033
Target:  5'- -cGCGGCuucgGCgcGCGc-GCCgCGCACCg -3'
miRNA:   3'- gaCGCCG----CGaaUGCaaCGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 31165 0.66 0.885033
Target:  5'- -gGCGGCGUcgACGccgcgcuggGCgCCgACGCCa -3'
miRNA:   3'- gaCGCCGCGaaUGCaa-------CG-GGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 82444 0.66 0.885033
Target:  5'- -cGgGGCGCUUggcuccaggcGCGgcggGCCCgGCcCCg -3'
miRNA:   3'- gaCgCCGCGAA----------UGCaa--CGGGgUGuGG- -5'
6494 3' -56.5 NC_001847.1 + 47422 0.66 0.885033
Target:  5'- -gGCGGCGuCUgcgACGUcgucgGCUUCGcCGCCg -3'
miRNA:   3'- gaCGCCGC-GAa--UGCAa----CGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 95296 0.66 0.885033
Target:  5'- uUGCGGcCGCUgGCGccuccagGCgCgGCGCCg -3'
miRNA:   3'- gACGCC-GCGAaUGCaa-----CGgGgUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 44937 0.66 0.885033
Target:  5'- gCUGgGGCGCUcgggcugggcgACGgcGCgCCGCAgCa -3'
miRNA:   3'- -GACgCCGCGAa----------UGCaaCGgGGUGUgG- -5'
6494 3' -56.5 NC_001847.1 + 75731 0.66 0.885033
Target:  5'- -cGgGGCGCa-GCGaUGaCCgCCGCGCCu -3'
miRNA:   3'- gaCgCCGCGaaUGCaAC-GG-GGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 16851 0.66 0.885033
Target:  5'- -gGCGGCGCUcgagGCGagcggGCUCCuggagagacauCACCa -3'
miRNA:   3'- gaCGCCGCGAa---UGCaa---CGGGGu----------GUGG- -5'
6494 3' -56.5 NC_001847.1 + 126272 0.66 0.885033
Target:  5'- -cGCuGGCGCUc-UGggGCCCaauuGCGCCa -3'
miRNA:   3'- gaCG-CCGCGAauGCaaCGGGg---UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 48742 0.66 0.885033
Target:  5'- -gGCGGUGCagUAUGacucaGCCgCGCGCCc -3'
miRNA:   3'- gaCGCCGCGa-AUGCaa---CGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 96422 0.66 0.885033
Target:  5'- -gGCGGgGCcgGCGgcaggcgcgGCCCCggagGCACUg -3'
miRNA:   3'- gaCGCCgCGaaUGCaa-------CGGGG----UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 75658 0.66 0.885033
Target:  5'- ---aGGCGCggGCGUUGCUCgugaAgGCCg -3'
miRNA:   3'- gacgCCGCGaaUGCAACGGGg---UgUGG- -5'
6494 3' -56.5 NC_001847.1 + 66821 0.66 0.884338
Target:  5'- -aGCGGCGCgUUcugcaccuguuugACG-UGCCCacgauCACCa -3'
miRNA:   3'- gaCGCCGCG-AA-------------UGCaACGGGgu---GUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.