miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 19791 0.66 0.787159
Target:  5'- aUCAGCAucGuCGGcGGAGGCGGUgGCGg -3'
miRNA:   3'- -AGUUGUucCcGCC-CCUUCGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 96264 0.66 0.787159
Target:  5'- gCGGCAAuGGCGGGGccggaaccGgGGCCGUAc -3'
miRNA:   3'- aGUUGUUcCCGCCCCuu------CgUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73232 0.66 0.787159
Target:  5'- -gGAgGGGGGCGGcGgcGCGGgCGCGc -3'
miRNA:   3'- agUUgUUCCCGCCcCuuCGUCgGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96801 0.66 0.787159
Target:  5'- -aAGCu-GGGuCGGGGGGcgcGCAGCgGCGg -3'
miRNA:   3'- agUUGuuCCC-GCCCCUU---CGUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 124453 0.66 0.787159
Target:  5'- -aGGCcGGcGGUGcGGGAAGCGGCUGg- -3'
miRNA:   3'- agUUGuUC-CCGC-CCCUUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 94155 0.66 0.787159
Target:  5'- gCGACAucucGcGGCGGcugcuGGgcGCGGCCGCc -3'
miRNA:   3'- aGUUGUu---C-CCGCC-----CCuuCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 87408 0.66 0.787159
Target:  5'- --cGCGcGGGCGGGGccccGCccGCCGCGc -3'
miRNA:   3'- aguUGUuCCCGCCCCuu--CGu-CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 12492 0.66 0.787159
Target:  5'- gCGGCGGGGGCGGccaagaacccGGGccagacgacgaaGGCGacgacGCCGCAg -3'
miRNA:   3'- aGUUGUUCCCGCC----------CCU------------UCGU-----CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 74385 0.66 0.787159
Target:  5'- ----aGAGGcGCuGGGGGAccgcGCGGCCGCc -3'
miRNA:   3'- aguugUUCC-CG-CCCCUU----CGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 15787 0.66 0.787159
Target:  5'- gCGGCAAGcgccgcgcGGC-GGGAGGCGGCgGUg -3'
miRNA:   3'- aGUUGUUC--------CCGcCCCUUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 120504 0.66 0.787159
Target:  5'- gCAGCGAGcGGCGcGcGAGC-GCCGCGg -3'
miRNA:   3'- aGUUGUUC-CCGCcCcUUCGuCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 5982 0.66 0.777895
Target:  5'- cUCGGCuuu-GCGGGG-GGCAGCCGa- -3'
miRNA:   3'- -AGUUGuuccCGCCCCuUCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 41084 0.66 0.777895
Target:  5'- --cGCAGGGuGuCGGGGGugauGGUAGCCGg- -3'
miRNA:   3'- aguUGUUCC-C-GCCCCU----UCGUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 47688 0.66 0.777895
Target:  5'- aCGACGAGGuccuCGGcGuuGGCGGCCGCc -3'
miRNA:   3'- aGUUGUUCCc---GCC-CcuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 86018 0.66 0.777895
Target:  5'- -aGGCGGGGcGCGGcGGGAGCgcgaggaggacaAGCCGg- -3'
miRNA:   3'- agUUGUUCC-CGCC-CCUUCG------------UCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 42372 0.66 0.777895
Target:  5'- cCAGCGccucGGG-GGGGAugAGCucgcggAGCCGCAu -3'
miRNA:   3'- aGUUGUu---CCCgCCCCU--UCG------UCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 70502 0.66 0.777895
Target:  5'- -uGACGAcGGCGGGcaucAAGCAGCgGCu -3'
miRNA:   3'- agUUGUUcCCGCCCc---UUCGUCGgCGu -5'
6494 5' -58.2 NC_001847.1 + 43810 0.66 0.777895
Target:  5'- cCGGuCGAGGGCGac--GGCGGCCGCu -3'
miRNA:   3'- aGUU-GUUCCCGCcccuUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 127877 0.66 0.777895
Target:  5'- aCGAUggGGGgGGGGAGGgGGaaaaaagGCAa -3'
miRNA:   3'- aGUUGuuCCCgCCCCUUCgUCgg-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 106786 0.66 0.777895
Target:  5'- --cGCGAGGGCGccGGggGCccgGGCgCGCGg -3'
miRNA:   3'- aguUGUUCCCGCc-CCuuCG---UCG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.