miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 51601 0.66 0.698997
Target:  5'- gCGGCGGCGugaacauucucagCGGG-CCGCUGGg- -3'
miRNA:   3'- aGUCGUCGCuaa----------GCCCgGGCGACCgc -5'
6495 3' -60.5 NC_001847.1 + 61455 0.66 0.69801
Target:  5'- --cGCGGCGAggCGGucgcgcagcagcGCCgcguCGCUGGCGc -3'
miRNA:   3'- aguCGUCGCUaaGCC------------CGG----GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 96429 0.66 0.69801
Target:  5'- cCGGCGGCaGGcgCGGcCCCGgaGGCa -3'
miRNA:   3'- aGUCGUCG-CUaaGCCcGGGCgaCCGc -5'
6495 3' -60.5 NC_001847.1 + 20070 0.66 0.69801
Target:  5'- -gAGCGGCGuggCGGcuCCCGC-GGCGc -3'
miRNA:   3'- agUCGUCGCuaaGCCc-GGGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 124645 0.66 0.69801
Target:  5'- gCAGCAGCG---CGGGgCCGUcGGgGa -3'
miRNA:   3'- aGUCGUCGCuaaGCCCgGGCGaCCgC- -5'
6495 3' -60.5 NC_001847.1 + 7237 0.66 0.69801
Target:  5'- gCAGCGGCuggUCGGGUggCUGUgcgGGCGc -3'
miRNA:   3'- aGUCGUCGcuaAGCCCG--GGCGa--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 100644 0.66 0.69801
Target:  5'- gCuGCGGCGcca-GGGCCgCGCUGcuGCGg -3'
miRNA:   3'- aGuCGUCGCuaagCCCGG-GCGAC--CGC- -5'
6495 3' -60.5 NC_001847.1 + 31399 0.66 0.69801
Target:  5'- cCAGCGcGCGaAUUCGuGGaCgCCGuCUGGCa -3'
miRNA:   3'- aGUCGU-CGC-UAAGC-CC-G-GGC-GACCGc -5'
6495 3' -60.5 NC_001847.1 + 62692 0.66 0.69801
Target:  5'- --uGCuAGCGAUcgUCuGGGCCgGCaGGCGc -3'
miRNA:   3'- aguCG-UCGCUA--AG-CCCGGgCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 111074 0.66 0.69801
Target:  5'- gCuGCcGCGGgccUGGGCCCGgCUGcGCGa -3'
miRNA:   3'- aGuCGuCGCUaa-GCCCGGGC-GAC-CGC- -5'
6495 3' -60.5 NC_001847.1 + 26031 0.66 0.697023
Target:  5'- gCGGCAGCaaaaGGUgCGGGCCaggugcuCGCUcGGCa -3'
miRNA:   3'- aGUCGUCG----CUAaGCCCGG-------GCGA-CCGc -5'
6495 3' -60.5 NC_001847.1 + 72577 0.66 0.695046
Target:  5'- cCuGCAcGCGAUgcgCGGGCugggccaaaacgcgCUGCUGGCc -3'
miRNA:   3'- aGuCGU-CGCUAa--GCCCG--------------GGCGACCGc -5'
6495 3' -60.5 NC_001847.1 + 50855 0.66 0.688111
Target:  5'- aCAGC-GCGcUUCGGcGCCCG--GGCGc -3'
miRNA:   3'- aGUCGuCGCuAAGCC-CGGGCgaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 26391 0.66 0.688111
Target:  5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5'
6495 3' -60.5 NC_001847.1 + 86377 0.66 0.688111
Target:  5'- -aGGCGGCGGgccgcggcggCGGGCgCGC-GGCu -3'
miRNA:   3'- agUCGUCGCUaa--------GCCCGgGCGaCCGc -5'
6495 3' -60.5 NC_001847.1 + 53017 0.66 0.688111
Target:  5'- aCAGCGGCGGccgcugcgcgcUCGGGCCuCGgcuccgagcCUGGCc -3'
miRNA:   3'- aGUCGUCGCUa----------AGCCCGG-GC---------GACCGc -5'
6495 3' -60.5 NC_001847.1 + 69398 0.66 0.688111
Target:  5'- cCGGCGGCcuuugCGGGCCCggcGCUGuuccuGCGg -3'
miRNA:   3'- aGUCGUCGcuaa-GCCCGGG---CGAC-----CGC- -5'
6495 3' -60.5 NC_001847.1 + 28097 0.66 0.688111
Target:  5'- -gGGCGGCGGUgcccUCGGGgCCaggaccgagGCcGGCGa -3'
miRNA:   3'- agUCGUCGCUA----AGCCCgGG---------CGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 129204 0.66 0.688111
Target:  5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3'
miRNA:   3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5'
6495 3' -60.5 NC_001847.1 + 130910 0.66 0.688111
Target:  5'- -gGGCGGCGGUgcccUCGGGgCCaggaccgagGCcGGCGa -3'
miRNA:   3'- agUCGUCGCUA----AGCCCgGG---------CGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.