Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6495 | 5' | -56.7 | NC_001847.1 | + | 124568 | 0.66 | 0.866934 |
Target: 5'- -gCGCgcgGGGGGGCcgCCGGCgccgGGcCCGGCg -3' miRNA: 3'- aaGCGa--UUUCUCG--GGCUG----CCaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 14328 | 0.66 | 0.866934 |
Target: 5'- cUCGCgguGGGGCCgGGCGuGguggCGGCg -3' miRNA: 3'- aAGCGauuUCUCGGgCUGC-Cag--GCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 21755 | 0.66 | 0.866934 |
Target: 5'- -gCGCgcgGGGGGGCcgCCGGCgccgGGcCCGGCg -3' miRNA: 3'- aaGCGa--UUUCUCG--GGCUG----CCaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 93598 | 0.66 | 0.866934 |
Target: 5'- -gCGCUGGAGAagaucaagGCCCG-CGG--CGGCa -3' miRNA: 3'- aaGCGAUUUCU--------CGGGCuGCCagGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 85626 | 0.66 | 0.866934 |
Target: 5'- --aGCaGGGGAGCCCcGCGc-CCGGCg -3' miRNA: 3'- aagCGaUUUCUCGGGcUGCcaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 25192 | 0.66 | 0.866934 |
Target: 5'- --aGCUGGccagcGAGCCCcgcgcGCGG-CCGGCa -3' miRNA: 3'- aagCGAUUu----CUCGGGc----UGCCaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 9261 | 0.66 | 0.864671 |
Target: 5'- -aCGCUGcgGAGuaacuuguauauaaAGCUCG-CGGUCCcGGCg -3' miRNA: 3'- aaGCGAU--UUC--------------UCGGGCuGCCAGG-CCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 134736 | 0.66 | 0.86239 |
Target: 5'- -cCGCccc-GGGCCCucggucucggucggaGcGCGGUCCGGCg -3' miRNA: 3'- aaGCGauuuCUCGGG---------------C-UGCCAGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 100818 | 0.66 | 0.86239 |
Target: 5'- aUUGCggccgaccucGGCCCgGGCGGcUCCGGCc -3' miRNA: 3'- aAGCGauuuc-----UCGGG-CUGCC-AGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 29026 | 0.66 | 0.859318 |
Target: 5'- aUCGCgcccAGAGCCgCG-CGcG-CCGGCa -3' miRNA: 3'- aAGCGauu-UCUCGG-GCuGC-CaGGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 65472 | 0.66 | 0.859318 |
Target: 5'- -gCGCgcgGAGGcucGCuCUGGCGGUCCauGGCg -3' miRNA: 3'- aaGCGa--UUUCu--CG-GGCUGCCAGG--CCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 85966 | 0.66 | 0.859318 |
Target: 5'- -cCGCUugcagcGGAcGCCCGGCgcgugaccguGGUCCGcGCg -3' miRNA: 3'- aaGCGAuu----UCU-CGGGCUG----------CCAGGC-CG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 78043 | 0.66 | 0.859318 |
Target: 5'- -gCGCgcGGcGGCgCGGCGGUCCaGCg -3' miRNA: 3'- aaGCGauUUcUCGgGCUGCCAGGcCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 31218 | 0.66 | 0.859318 |
Target: 5'- -gUGCUGGAG-GCCgCGGCGGcgCCGcccGCg -3' miRNA: 3'- aaGCGAUUUCuCGG-GCUGCCa-GGC---CG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 24221 | 0.66 | 0.859318 |
Target: 5'- -cCGCgguuguacGGGGCCaCGugGGU-CGGCg -3' miRNA: 3'- aaGCGauu-----UCUCGG-GCugCCAgGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 78242 | 0.66 | 0.859318 |
Target: 5'- gUUCGCccuGGAGgCCGACGucgCCGcGCa -3' miRNA: 3'- -AAGCGauuUCUCgGGCUGCca-GGC-CG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 134031 | 0.66 | 0.859318 |
Target: 5'- -gUGCUGGAG-GCCgCGGCGGcgCCGcccGCg -3' miRNA: 3'- aaGCGAUUUCuCGG-GCUGCCa-GGC---CG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 127034 | 0.66 | 0.859318 |
Target: 5'- -cCGCgguuguacGGGGCCaCGugGGU-CGGCg -3' miRNA: 3'- aaGCGauu-----UCUCGG-GCugCCAgGCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 5046 | 0.66 | 0.851494 |
Target: 5'- cUCGUccc--AGCCCGcgucGCGGUCgGGCg -3' miRNA: 3'- aAGCGauuucUCGGGC----UGCCAGgCCG- -5' |
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6495 | 5' | -56.7 | NC_001847.1 | + | 83747 | 0.66 | 0.851494 |
Target: 5'- -gCGCUAuuGGAcucGCCaCGugGGacaCCGGCg -3' miRNA: 3'- aaGCGAUu-UCU---CGG-GCugCCa--GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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