miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 122138 0.66 0.948463
Target:  5'- aCGGCcg-GCGc-GCAGggCGCCgCGCGGg -3'
miRNA:   3'- -GUCGuauUGCuuCGUCa-GCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 49349 0.66 0.948463
Target:  5'- aCGGCAUucgcgccaAACGucgcGGUGGUCGCCgGCa- -3'
miRNA:   3'- -GUCGUA--------UUGCu---UCGUCAGCGGgCGcc -5'
6497 3' -54.3 NC_001847.1 + 14807 0.66 0.948463
Target:  5'- gCAGCG--GCGGAGCuGcgcggCGCCCugcgcGCGGu -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa----GCGGG-----CGCC- -5'
6497 3' -54.3 NC_001847.1 + 132634 0.66 0.948463
Target:  5'- gCAGCAaagcGCGAGGCGGcC-CUCGCGa -3'
miRNA:   3'- -GUCGUau--UGCUUCGUCaGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 28621 0.66 0.948463
Target:  5'- -uGCcgccCGAGGCGcuagUGCCCGCGGg -3'
miRNA:   3'- guCGuauuGCUUCGUca--GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 13937 0.66 0.948463
Target:  5'- aCGGCGUcaugcGCGAGcuGCGGcugCgGCCCGUGGg -3'
miRNA:   3'- -GUCGUAu----UGCUU--CGUCa--G-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 100349 0.66 0.948463
Target:  5'- cCAGCGgccGCGGGucGUAGccgCGCgCCGCGGc -3'
miRNA:   3'- -GUCGUau-UGCUU--CGUCa--GCG-GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 125395 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 80575 0.66 0.948463
Target:  5'- cCAGCcc-GCGggGCcGUCGUccuCCGCGc -3'
miRNA:   3'- -GUCGuauUGCuuCGuCAGCG---GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 22582 0.66 0.948463
Target:  5'- gGGCGcccCGggGCAGg-GCCCGCc- -3'
miRNA:   3'- gUCGUauuGCuuCGUCagCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 132179 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 29366 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 86482 0.66 0.945381
Target:  5'- gCGGCAcgGACGAcgaggcugcgggggcGGCGG-CGCCCcgccgccGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU---------------UCGUCaGCGGG-------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 66680 0.66 0.944023
Target:  5'- -cGCGcGGCGggGCcc-CGgCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGucaGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105586 0.66 0.944023
Target:  5'- cCGGCAcGGCGuccguGCGGgggaacucgagCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuu---CGUCa----------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 7146 0.66 0.944023
Target:  5'- gCAGCAUcAGCGAAaacccgaucgcGCAGcCGUCgGUGGc -3'
miRNA:   3'- -GUCGUA-UUGCUU-----------CGUCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105669 0.66 0.944023
Target:  5'- gAGCGUGccgccucggccGCG-GGCGGcgcuUCGgCCGCGGg -3'
miRNA:   3'- gUCGUAU-----------UGCuUCGUC----AGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 59347 0.66 0.944023
Target:  5'- cCGGCAUcgggGGCGGAGCGGcggCGgCaGCGGc -3'
miRNA:   3'- -GUCGUA----UUGCUUCGUCa--GCgGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 119368 0.66 0.944023
Target:  5'- gCGGCGcuugccgccGGCGaAAGCGGgcCGCCCGCGu -3'
miRNA:   3'- -GUCGUa--------UUGC-UUCGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 1919 0.66 0.944023
Target:  5'- gGGCAggUGGCGAGGCuuAGcCGgCgCGCGGc -3'
miRNA:   3'- gUCGU--AUUGCUUCG--UCaGCgG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.