Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 3' | -50.7 | NC_001847.1 | + | 52881 | 0.66 | 0.992492 |
Target: 5'- -cGAGCgc-GUACAGGCGaUGGCCAGu -3' miRNA: 3'- gcUUCGacaCAUGUUUGC-GCCGGUUc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 29466 | 0.66 | 0.992492 |
Target: 5'- cCGAAGCgcc--GCc--CGCGGCCGAGg -3' miRNA: 3'- -GCUUCGacacaUGuuuGCGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 5147 | 0.66 | 0.992492 |
Target: 5'- aGAAGCagggGUGUGCGGGCcaggcaucgGCGGCgAu- -3' miRNA: 3'- gCUUCGa---CACAUGUUUG---------CGCCGgUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 134202 | 0.66 | 0.992492 |
Target: 5'- uGGAGCg----GCGcGCGCGGgCCGAGg -3' miRNA: 3'- gCUUCGacacaUGUuUGCGCC-GGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 28822 | 0.66 | 0.992492 |
Target: 5'- aCGcAGGCgcgGUgGUGCGGcugcuagaacGCGCGGCCGc- -3' miRNA: 3'- -GC-UUCGa--CA-CAUGUU----------UGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 89032 | 0.66 | 0.992166 |
Target: 5'- aCGAcGCcGUGUGCGcgcugggcgacggcAugGCGcGCCGGGu -3' miRNA: 3'- -GCUuCGaCACAUGU--------------UugCGC-CGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 94154 | 0.66 | 0.991359 |
Target: 5'- cCGGAGCagGUG----AGCGCGGCCcGGc -3' miRNA: 3'- -GCUUCGa-CACauguUUGCGCCGGuUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 42534 | 0.66 | 0.991359 |
Target: 5'- gGAaaAGCUGcucgGUGagggcgaGGACGCGGCCGc- -3' miRNA: 3'- gCU--UCGACa---CAUg------UUUGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 10861 | 0.66 | 0.991359 |
Target: 5'- cCGAGGCgcg--GCGGGCGCGGgcgcCCAGGc -3' miRNA: 3'- -GCUUCGacacaUGUUUGCGCC----GGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 52570 | 0.66 | 0.991359 |
Target: 5'- gCGAgAGCUG-GaGCucgAGGCgGCGGCCGAGg -3' miRNA: 3'- -GCU-UCGACaCaUG---UUUG-CGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 49527 | 0.66 | 0.991359 |
Target: 5'- gCGggGCUccccUGCuucuACGCGGCCAu- -3' miRNA: 3'- -GCuuCGAcac-AUGuu--UGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 35923 | 0.66 | 0.991359 |
Target: 5'- gGGAGCcuuUGUGgcgGCGcgccgccGCGCGGCCGc- -3' miRNA: 3'- gCUUCG---ACACa--UGUu------UGCGCCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 116983 | 0.66 | 0.991359 |
Target: 5'- ---cGCUGgg-GCGAGCGUGGCUGAu -3' miRNA: 3'- gcuuCGACacaUGUUUGCGCCGGUUc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 43549 | 0.66 | 0.991359 |
Target: 5'- aGAAGCgccgccGCGAGCGCcgcgaggauGGCCGAGg -3' miRNA: 3'- gCUUCGacaca-UGUUUGCG---------CCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 14655 | 0.66 | 0.991359 |
Target: 5'- gCGgcGCUgacGUGaACAucgacGGCGCGGCCGGc -3' miRNA: 3'- -GCuuCGA---CACaUGU-----UUGCGCCGGUUc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 73 | 0.66 | 0.990095 |
Target: 5'- gGggGCgggGUGggggAUggGCGCGGagcgCGAGg -3' miRNA: 3'- gCuuCGa--CACa---UGuuUGCGCCg---GUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 20068 | 0.66 | 0.990095 |
Target: 5'- gGGAGCggcGUGgcgGCucccgcGGCGCGGCCcGGc -3' miRNA: 3'- gCUUCGa--CACa--UGu-----UUGCGCCGGuUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 99791 | 0.66 | 0.990095 |
Target: 5'- gGggGCagcgccUGUgGUGCGGGgucggaGCGGCCGGGg -3' miRNA: 3'- gCuuCG------ACA-CAUGUUUg-----CGCCGGUUC- -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 110138 | 0.66 | 0.990095 |
Target: 5'- uGAAGCUGcUGgacuCGAugGCcauGGCCAu- -3' miRNA: 3'- gCUUCGAC-ACau--GUUugCG---CCGGUuc -5' |
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6498 | 3' | -50.7 | NC_001847.1 | + | 37310 | 0.66 | 0.989961 |
Target: 5'- aCGugcuAGCcgUGUGgcgGCAcgcgcccGACGCGGCCAc- -3' miRNA: 3'- -GCu---UCG--ACACa--UGU-------UUGCGCCGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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