miRNA display CGI


Results 1 - 20 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 3' -60.2 NC_001847.1 + 81175 0.65 0.716447
Target:  5'- cGCCGCUCggagggcUCGCGgcggcgccagccggCGCGCGCGUa -3'
miRNA:   3'- aCGGCGAG-------GGCGUaca-----------GCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 109420 0.66 0.714488
Target:  5'- cGCCGCUUcucguccuucucgggCCGCA-GUgGCGgcuUACGUCg -3'
miRNA:   3'- aCGGCGAG---------------GGCGUaCAgCGC---GUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 86651 0.66 0.710563
Target:  5'- cGCCGC-CCCGgAg--CGCGcCGCGcUCg -3'
miRNA:   3'- aCGGCGaGGGCgUacaGCGC-GUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 28733 0.66 0.710563
Target:  5'- gGCCGCgggCa-GCGUcGcCGCGCGCGUg -3'
miRNA:   3'- aCGGCGa--GggCGUA-CaGCGCGUGCAg -5'
6499 3' -60.2 NC_001847.1 + 76121 0.66 0.710563
Target:  5'- cGCCGCaCCCGCcac-CGuCGCACGcUCu -3'
miRNA:   3'- aCGGCGaGGGCGuacaGC-GCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 104004 0.66 0.710563
Target:  5'- cGCCGCggCCgGCAgcucGUCGgGCGCc-- -3'
miRNA:   3'- aCGGCGa-GGgCGUa---CAGCgCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 104542 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGgccaGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGagGGCGUa---CaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 76894 0.66 0.710563
Target:  5'- cGCCGaacccuaaUCCgGCcgagcucgCGCGCACGUCc -3'
miRNA:   3'- aCGGCg-------AGGgCGuaca----GCGCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 2981 0.66 0.710563
Target:  5'- cGCCGCcggggCCgGCGcUGgagcCGCGCGCGcUCc -3'
miRNA:   3'- aCGGCGa----GGgCGU-ACa---GCGCGUGC-AG- -5'
6499 3' -60.2 NC_001847.1 + 42151 0.66 0.710563
Target:  5'- cGCCuccaGCgCUCGCGUGUgGCuGCACGcCg -3'
miRNA:   3'- aCGG----CGaGGGCGUACAgCG-CGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 5940 0.66 0.710563
Target:  5'- cGCCGCgagcaagCgCGCGUacGUaCGCGCGCG-Cg -3'
miRNA:   3'- aCGGCGa------GgGCGUA--CA-GCGCGUGCaG- -5'
6499 3' -60.2 NC_001847.1 + 91694 0.66 0.710563
Target:  5'- cUGCgGCUCCCGCu--UCGCucucgggcaccGCGCGa- -3'
miRNA:   3'- -ACGgCGAGGGCGuacAGCG-----------CGUGCag -5'
6499 3' -60.2 NC_001847.1 + 105701 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGcGUCGaguacCGCGCGa- -3'
miRNA:   3'- aCGGCGagGGCGUaCAGC-----GCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 69084 0.66 0.710563
Target:  5'- cGCCGCgUCUgGCGc--CGCGCGCGg- -3'
miRNA:   3'- aCGGCG-AGGgCGUacaGCGCGUGCag -5'
6499 3' -60.2 NC_001847.1 + 113013 0.66 0.710563
Target:  5'- uUG-CGCUCCaGCAcGcCGcCGCGCGUCu -3'
miRNA:   3'- -ACgGCGAGGgCGUaCaGC-GCGUGCAG- -5'
6499 3' -60.2 NC_001847.1 + 1729 0.66 0.710563
Target:  5'- cGCCGCg-CCGCGgccaGcCGCGCGCa-- -3'
miRNA:   3'- aCGGCGagGGCGUa---CaGCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 33256 0.66 0.710563
Target:  5'- -uCCGCUgCCGCG-GUcCGCGCGCa-- -3'
miRNA:   3'- acGGCGAgGGCGUaCA-GCGCGUGcag -5'
6499 3' -60.2 NC_001847.1 + 85105 0.66 0.710563
Target:  5'- gGCCGC-CaCCGCGccccgCGgGCugGUCa -3'
miRNA:   3'- aCGGCGaG-GGCGUaca--GCgCGugCAG- -5'
6499 3' -60.2 NC_001847.1 + 27454 0.66 0.710563
Target:  5'- cGCCGCcaaCCGCAg---GCGC-CGUCa -3'
miRNA:   3'- aCGGCGag-GGCGUacagCGCGuGCAG- -5'
6499 3' -60.2 NC_001847.1 + 83761 0.66 0.710563
Target:  5'- cGCCGCgaCCGCGgccucCGCGaGCGUCa -3'
miRNA:   3'- aCGGCGagGGCGUaca--GCGCgUGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.