miRNA display CGI


Results 1 - 20 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 52992 0.66 0.83476
Target:  5'- gGGACGCGCaggcauggcGGAGCcgacaGCGGCGGCc- -3'
miRNA:   3'- aUUUGCGCGgc-------UCUCG-----UGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 106741 0.66 0.83476
Target:  5'- --uGCGCGCCcgcgcuGGCGCcGCGGCGGg -3'
miRNA:   3'- auuUGCGCGGcuc---UCGUGcCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 40535 0.66 0.83476
Target:  5'- -cGACGCG-CGAcGuGCuGCGGCAGCGc -3'
miRNA:   3'- auUUGCGCgGCU-CuCG-UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 27990 0.66 0.83476
Target:  5'- ---cCGCGCUGGGccGCGCuGCAGCGc -3'
miRNA:   3'- auuuGCGCGGCUCu-CGUGcCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 134571 0.66 0.83476
Target:  5'- aGGACccgGCGCCG-GAGaCGCGGCgcuGGCGu -3'
miRNA:   3'- aUUUG---CGCGGCuCUC-GUGCCG---UCGUc -5'
6499 5' -57.1 NC_001847.1 + 69348 0.66 0.83476
Target:  5'- -uGGCgGCGCUGGugcuGGCGCGcGCGGCGGu -3'
miRNA:   3'- auUUG-CGCGGCUc---UCGUGC-CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 122228 0.66 0.83476
Target:  5'- --cGCGCGCCcccgcGGcGGCACGGCGcGCGc -3'
miRNA:   3'- auuUGCGCGGc----UC-UCGUGCCGU-CGUc -5'
6499 5' -57.1 NC_001847.1 + 133744 0.66 0.83476
Target:  5'- ---cCGUGCCGccgcgcGAGUAcCGGCAGCGc -3'
miRNA:   3'- auuuGCGCGGCu-----CUCGU-GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 80627 0.66 0.83476
Target:  5'- --cGCGguUGCCGAuGGCgACGGCGGCGc -3'
miRNA:   3'- auuUGC--GCGGCUcUCG-UGCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 44803 0.66 0.83476
Target:  5'- cGAAaGCGCCGA--GCGCGGCAccGCGc -3'
miRNA:   3'- aUUUgCGCGGCUcuCGUGCCGU--CGUc -5'
6499 5' -57.1 NC_001847.1 + 8621 0.66 0.83476
Target:  5'- cAAGCccCGCCGGGGGaGCGGCcgcuGCGGa -3'
miRNA:   3'- aUUUGc-GCGGCUCUCgUGCCGu---CGUC- -5'
6499 5' -57.1 NC_001847.1 + 32815 0.66 0.83476
Target:  5'- uUGAGCGCGCgCGAGcGCGCgaGGCccGCGu -3'
miRNA:   3'- -AUUUGCGCG-GCUCuCGUG--CCGu-CGUc -5'
6499 5' -57.1 NC_001847.1 + 8069 0.66 0.83476
Target:  5'- --cGCGCGCagagGGGGGCACcgccGCGGCGa -3'
miRNA:   3'- auuUGCGCGg---CUCUCGUGc---CGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 59349 0.66 0.83476
Target:  5'- ----gGCaUCGGGGGCggaGCGGCGGCGGc -3'
miRNA:   3'- auuugCGcGGCUCUCG---UGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 9911 0.66 0.83476
Target:  5'- -cGugGcCGCCGAGuacGCcCGGCAgGCGGc -3'
miRNA:   3'- auUugC-GCGGCUCu--CGuGCCGU-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 94212 0.66 0.83476
Target:  5'- --uGCGCGCgGcGGAGCucGCGGCGGgGc -3'
miRNA:   3'- auuUGCGCGgC-UCUCG--UGCCGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 105709 0.66 0.83476
Target:  5'- --cGCGCGUCGAGuaccGCGCGaGCGGgGc -3'
miRNA:   3'- auuUGCGCGGCUCu---CGUGC-CGUCgUc -5'
6499 5' -57.1 NC_001847.1 + 84450 0.66 0.83476
Target:  5'- --cGCGUGCCGGucgucgcgcGAGCACaGCccGCAGg -3'
miRNA:   3'- auuUGCGCGGCU---------CUCGUGcCGu-CGUC- -5'
6499 5' -57.1 NC_001847.1 + 86536 0.66 0.83476
Target:  5'- --cGCGUGCUGGcGGCGCGGCuuaAGgGGg -3'
miRNA:   3'- auuUGCGCGGCUcUCGUGCCG---UCgUC- -5'
6499 5' -57.1 NC_001847.1 + 88853 0.66 0.83476
Target:  5'- cGGGCGCGacaugcugcUCGAGA-CGCGGCGGUAc -3'
miRNA:   3'- aUUUGCGC---------GGCUCUcGUGCCGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.