miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 32904 0.66 0.983193
Target:  5'- gCCGCGCGcGAGcGCCuGGACGC-CGUc- -3'
miRNA:   3'- -GGCGCGU-CUU-UGGuUCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 68743 0.66 0.983193
Target:  5'- cCCGCGCcgcGGAugU---GCGCGCGUGAu -3'
miRNA:   3'- -GGCGCGu--CUUugGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 103688 0.66 0.983193
Target:  5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 80116 0.66 0.983193
Target:  5'- cCUGCGCAaacgcGCCc-GACGCGCGCa- -3'
miRNA:   3'- -GGCGCGUcuu--UGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 875 0.66 0.983193
Target:  5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 87429 0.66 0.983193
Target:  5'- gCCGCGCucGAAgaGCUGcuGCGCGCGCu- -3'
miRNA:   3'- -GGCGCGu-CUU--UGGUucUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 8104 0.66 0.983193
Target:  5'- gCGaCGCGGc-GCCAGcGCAgGCGCGGg -3'
miRNA:   3'- gGC-GCGUCuuUGGUUcUGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 86037 0.66 0.983193
Target:  5'- gCUGCGCuGGuuGGgCGAGGCGCugGgGGc -3'
miRNA:   3'- -GGCGCGuCU--UUgGUUCUGUGugCgCU- -5'
6500 3' -52.4 NC_001847.1 + 30494 0.66 0.983193
Target:  5'- uCgGCGCGGc--CCucGGGCGCGCGCu- -3'
miRNA:   3'- -GgCGCGUCuuuGGu-UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 127202 0.66 0.983193
Target:  5'- -gGCGC-GAAcuCCGGcgcGGCGCGCGCGGg -3'
miRNA:   3'- ggCGCGuCUUu-GGUU---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118760 0.66 0.983193
Target:  5'- aCGCGCGGuu-----GugGCGCGCGGu -3'
miRNA:   3'- gGCGCGUCuuugguuCugUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 25592 0.66 0.983193
Target:  5'- gUCGUcCAGAGGcacgcuCCGAGcACGCACGCGc -3'
miRNA:   3'- -GGCGcGUCUUU------GGUUC-UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 72587 0.66 0.983193
Target:  5'- aUGCGCGGGcugGGCCAAaACGCGCuGCu- -3'
miRNA:   3'- gGCGCGUCU---UUGGUUcUGUGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 28093 0.66 0.983193
Target:  5'- -gGCGCcugc-CCGGGGcCGCGCGCGAc -3'
miRNA:   3'- ggCGCGucuuuGGUUCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14566 0.66 0.983193
Target:  5'- -aGCGCGGguGCUGGcGgGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCuuUGGUUcUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 85205 0.66 0.983193
Target:  5'- aCCGCGCGccacGGcguCCAAcguGCGCACGCGc -3'
miRNA:   3'- -GGCGCGU----CUuu-GGUUc--UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 37331 0.66 0.983193
Target:  5'- aCGCGCccGAcgcGGCC---ACGCGCGCGAc -3'
miRNA:   3'- gGCGCGu-CU---UUGGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 105225 0.66 0.983193
Target:  5'- aCC-CGCGGgcGCgcGGGCACAgGCGGg -3'
miRNA:   3'- -GGcGCGUCuuUGguUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38577 0.66 0.983193
Target:  5'- gCCGgagcCGCGGAGGCUccuggcguuGAG-CGCGCGCGu -3'
miRNA:   3'- -GGC----GCGUCUUUGG---------UUCuGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 25103 0.66 0.983193
Target:  5'- aCCGCGguu-GAgCAAGAUuCGCGCGAc -3'
miRNA:   3'- -GGCGCgucuUUgGUUCUGuGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.