Results 1 - 20 of 777 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 25103 | 0.66 | 0.983193 |
Target: 5'- aCCGCGguu-GAgCAAGAUuCGCGCGAc -3' miRNA: 3'- -GGCGCgucuUUgGUUCUGuGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 875 | 0.66 | 0.983193 |
Target: 5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3' miRNA: 3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 80116 | 0.66 | 0.983193 |
Target: 5'- cCUGCGCAaacgcGCCc-GACGCGCGCa- -3' miRNA: 3'- -GGCGCGUcuu--UGGuuCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 25592 | 0.66 | 0.983193 |
Target: 5'- gUCGUcCAGAGGcacgcuCCGAGcACGCACGCGc -3' miRNA: 3'- -GGCGcGUCUUU------GGUUC-UGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 37331 | 0.66 | 0.983193 |
Target: 5'- aCGCGCccGAcgcGGCC---ACGCGCGCGAc -3' miRNA: 3'- gGCGCGu-CU---UUGGuucUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 85205 | 0.66 | 0.983193 |
Target: 5'- aCCGCGCGccacGGcguCCAAcguGCGCACGCGc -3' miRNA: 3'- -GGCGCGU----CUuu-GGUUc--UGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 127202 | 0.66 | 0.983193 |
Target: 5'- -gGCGC-GAAcuCCGGcgcGGCGCGCGCGGg -3' miRNA: 3'- ggCGCGuCUUu-GGUU---CUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 72587 | 0.66 | 0.983193 |
Target: 5'- aUGCGCGGGcugGGCCAAaACGCGCuGCu- -3' miRNA: 3'- gGCGCGUCU---UUGGUUcUGUGUG-CGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 38577 | 0.66 | 0.983193 |
Target: 5'- gCCGgagcCGCGGAGGCUccuggcguuGAG-CGCGCGCGu -3' miRNA: 3'- -GGC----GCGUCUUUGG---------UUCuGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 105225 | 0.66 | 0.983193 |
Target: 5'- aCC-CGCGGgcGCgcGGGCACAgGCGGg -3' miRNA: 3'- -GGcGCGUCuuUGguUCUGUGUgCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 30494 | 0.66 | 0.983193 |
Target: 5'- uCgGCGCGGc--CCucGGGCGCGCGCu- -3' miRNA: 3'- -GgCGCGUCuuuGGu-UCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 8104 | 0.66 | 0.983193 |
Target: 5'- gCGaCGCGGc-GCCAGcGCAgGCGCGGg -3' miRNA: 3'- gGC-GCGUCuuUGGUUcUGUgUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 68743 | 0.66 | 0.983193 |
Target: 5'- cCCGCGCcgcGGAugU---GCGCGCGUGAu -3' miRNA: 3'- -GGCGCGu--CUUugGuucUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 32904 | 0.66 | 0.983193 |
Target: 5'- gCCGCGCGcGAGcGCCuGGACGC-CGUc- -3' miRNA: 3'- -GGCGCGU-CUU-UGGuUCUGUGuGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 118760 | 0.66 | 0.983193 |
Target: 5'- aCGCGCGGuu-----GugGCGCGCGGu -3' miRNA: 3'- gGCGCGUCuuugguuCugUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 103688 | 0.66 | 0.983193 |
Target: 5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3' miRNA: 3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 86037 | 0.66 | 0.983193 |
Target: 5'- gCUGCGCuGGuuGGgCGAGGCGCugGgGGc -3' miRNA: 3'- -GGCGCGuCU--UUgGUUCUGUGugCgCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 14566 | 0.66 | 0.983193 |
Target: 5'- -aGCGCGGguGCUGGcGgGCGCGCGGc -3' miRNA: 3'- ggCGCGUCuuUGGUUcUgUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 87429 | 0.66 | 0.983193 |
Target: 5'- gCCGCGCucGAAgaGCUGcuGCGCGCGCu- -3' miRNA: 3'- -GGCGCGu-CUU--UGGUucUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 28093 | 0.66 | 0.983193 |
Target: 5'- -gGCGCcugc-CCGGGGcCGCGCGCGAc -3' miRNA: 3'- ggCGCGucuuuGGUUCU-GUGUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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