miRNA display CGI


Results 1 - 20 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 122010 0.66 0.96789
Target:  5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3'
miRNA:   3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 73070 0.66 0.967575
Target:  5'- cGCCGCGgGCG-CGgaag-UCgaCGCg -3'
miRNA:   3'- aCGGCGCgCGCcGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 77709 0.66 0.967575
Target:  5'- cGCgCGCGCGCuGGUGcgcg--CUUgGCg -3'
miRNA:   3'- aCG-GCGCGCG-CCGCaaauaaGAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 96863 0.66 0.967575
Target:  5'- gGCgGUGgGCGGCGg----UCcgCGCu -3'
miRNA:   3'- aCGgCGCgCGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 124864 0.66 0.967575
Target:  5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3'
miRNA:   3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 62156 0.66 0.967575
Target:  5'- gGCCGCG-GCGGCGUaggc----CGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 67875 0.66 0.967575
Target:  5'- -cCCGCGCGCcuCGUUUAgcgUUUCGUc -3'
miRNA:   3'- acGGCGCGCGccGCAAAUaa-GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 100438 0.66 0.967575
Target:  5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3'
miRNA:   3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 78294 0.66 0.967575
Target:  5'- gGCCGCcgggcgcagacgGCGCGGCGcgg---CgcgCGCg -3'
miRNA:   3'- aCGGCG------------CGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 70754 0.66 0.967575
Target:  5'- cGCCGCGCagaGCGgGCGccgcauuuuUUUGUcuggcggcucgCUUCGCg -3'
miRNA:   3'- aCGGCGCG---CGC-CGC---------AAAUAa----------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 8780 0.66 0.967575
Target:  5'- cGCCGgGCGCGGCcgc----CUUCa- -3'
miRNA:   3'- aCGGCgCGCGCCGcaaauaaGAAGcg -5'
6500 5' -53.3 NC_001847.1 + 17286 0.66 0.967575
Target:  5'- gGCgCGUggaGCGCGGCGggUAguacUCggcggCGCg -3'
miRNA:   3'- aCG-GCG---CGCGCCGCaaAUa---AGaa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 34053 0.66 0.967575
Target:  5'- cGCgGCGCGCG-CGUUU-UUCgaggggcaCGCg -3'
miRNA:   3'- aCGgCGCGCGCcGCAAAuAAGaa------GCG- -5'
6500 5' -53.3 NC_001847.1 + 53574 0.66 0.967575
Target:  5'- cGCCGCGCuggGCGaCGUggAUgccUUUUUGCg -3'
miRNA:   3'- aCGGCGCG---CGCcGCAaaUA---AGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 34744 0.66 0.967575
Target:  5'- cGCaUGCGCGgGGCuUUUAUggcccaggUCGCg -3'
miRNA:   3'- aCG-GCGCGCgCCGcAAAUAaga-----AGCG- -5'
6500 5' -53.3 NC_001847.1 + 39067 0.66 0.967575
Target:  5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3'
miRNA:   3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5'
6500 5' -53.3 NC_001847.1 + 28963 0.66 0.967575
Target:  5'- gGCCGCG-GCGGgGUUUA-----CGCc -3'
miRNA:   3'- aCGGCGCgCGCCgCAAAUaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 60116 0.66 0.966614
Target:  5'- cGCU-CGCGCGGCGUgagcgagggggcgUCggCGCc -3'
miRNA:   3'- aCGGcGCGCGCCGCAaaua---------AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 52094 0.66 0.965633
Target:  5'- gGCCGCGcCGCGGCccaag-----CGCa -3'
miRNA:   3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 10816 0.66 0.965633
Target:  5'- cUGCCGCGCGCuGCugcagcacCUgcgCGCg -3'
miRNA:   3'- -ACGGCGCGCGcCGcaaauaa-GAa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.