Results 1 - 20 of 533 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 122010 | 0.66 | 0.96789 |
Target: 5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3' miRNA: 3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 8780 | 0.66 | 0.967575 |
Target: 5'- cGCCGgGCGCGGCcgc----CUUCa- -3' miRNA: 3'- aCGGCgCGCGCCGcaaauaaGAAGcg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 53574 | 0.66 | 0.967575 |
Target: 5'- cGCCGCGCuggGCGaCGUggAUgccUUUUUGCg -3' miRNA: 3'- aCGGCGCG---CGCcGCAaaUA---AGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 39067 | 0.66 | 0.967575 |
Target: 5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3' miRNA: 3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 100438 | 0.66 | 0.967575 |
Target: 5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3' miRNA: 3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 62156 | 0.66 | 0.967575 |
Target: 5'- gGCCGCG-GCGGCGUaggc----CGCc -3' miRNA: 3'- aCGGCGCgCGCCGCAaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 96863 | 0.66 | 0.967575 |
Target: 5'- gGCgGUGgGCGGCGg----UCcgCGCu -3' miRNA: 3'- aCGgCGCgCGCCGCaaauaAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 77709 | 0.66 | 0.967575 |
Target: 5'- cGCgCGCGCGCuGGUGcgcg--CUUgGCg -3' miRNA: 3'- aCG-GCGCGCG-CCGCaaauaaGAAgCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 73070 | 0.66 | 0.967575 |
Target: 5'- cGCCGCGgGCG-CGgaag-UCgaCGCg -3' miRNA: 3'- aCGGCGCgCGCcGCaaauaAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 124864 | 0.66 | 0.967575 |
Target: 5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3' miRNA: 3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 17286 | 0.66 | 0.967575 |
Target: 5'- gGCgCGUggaGCGCGGCGggUAguacUCggcggCGCg -3' miRNA: 3'- aCG-GCG---CGCGCCGCaaAUa---AGaa---GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 28963 | 0.66 | 0.967575 |
Target: 5'- gGCCGCG-GCGGgGUUUA-----CGCc -3' miRNA: 3'- aCGGCGCgCGCCgCAAAUaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 34744 | 0.66 | 0.967575 |
Target: 5'- cGCaUGCGCGgGGCuUUUAUggcccaggUCGCg -3' miRNA: 3'- aCG-GCGCGCgCCGcAAAUAaga-----AGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 34053 | 0.66 | 0.967575 |
Target: 5'- cGCgGCGCGCG-CGUUU-UUCgaggggcaCGCg -3' miRNA: 3'- aCGgCGCGCGCcGCAAAuAAGaa------GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 67875 | 0.66 | 0.967575 |
Target: 5'- -cCCGCGCGCcuCGUUUAgcgUUUCGUc -3' miRNA: 3'- acGGCGCGCGccGCAAAUaa-GAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 70754 | 0.66 | 0.967575 |
Target: 5'- cGCCGCGCagaGCGgGCGccgcauuuuUUUGUcuggcggcucgCUUCGCg -3' miRNA: 3'- aCGGCGCG---CGC-CGC---------AAAUAa----------GAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 78294 | 0.66 | 0.967575 |
Target: 5'- gGCCGCcgggcgcagacgGCGCGGCGcgg---CgcgCGCg -3' miRNA: 3'- aCGGCG------------CGCGCCGCaaauaaGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 60116 | 0.66 | 0.966614 |
Target: 5'- cGCU-CGCGCGGCGUgagcgagggggcgUCggCGCc -3' miRNA: 3'- aCGGcGCGCGCCGCAaaua---------AGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 52094 | 0.66 | 0.965633 |
Target: 5'- gGCCGCGcCGCGGCccaag-----CGCa -3' miRNA: 3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 10816 | 0.66 | 0.965633 |
Target: 5'- cUGCCGCGCGCuGCugcagcacCUgcgCGCg -3' miRNA: 3'- -ACGGCGCGCGcCGcaaauaa-GAa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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