Results 1 - 20 of 533 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 5' | -53.3 | NC_001847.1 | + | 122010 | 0.66 | 0.96789 |
Target: 5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3' miRNA: 3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 5738 | 0.66 | 0.964294 |
Target: 5'- cUGCC-CGCGgGGCG---GUUCgcCGCc -3' miRNA: 3'- -ACGGcGCGCgCCGCaaaUAAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 61259 | 0.66 | 0.962218 |
Target: 5'- cGCUGCGCGgGGCGccggcggaaCUgacgCGCc -3' miRNA: 3'- aCGGCGCGCgCCGCaaauaa---GAa---GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 13838 | 1.12 | 0.002911 |
Target: 5'- uUGCCGCGCGCGGCGUUUAUUCUUCGCu -3' miRNA: 3'- -ACGGCGCGCGCCGCAAAUAAGAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 70754 | 0.66 | 0.967575 |
Target: 5'- cGCCGCGCagaGCGgGCGccgcauuuuUUUGUcuggcggcucgCUUCGCg -3' miRNA: 3'- aCGGCGCG---CGC-CGC---------AAAUAa----------GAAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 39067 | 0.66 | 0.967575 |
Target: 5'- gGCuCGCGCaGCGG-GUUgagGUUCaUUCGg -3' miRNA: 3'- aCG-GCGCG-CGCCgCAAa--UAAG-AAGCg -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 73070 | 0.66 | 0.967575 |
Target: 5'- cGCCGCGgGCG-CGgaag-UCgaCGCg -3' miRNA: 3'- aCGGCGCgCGCcGCaaauaAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 62156 | 0.66 | 0.967575 |
Target: 5'- gGCCGCG-GCGGCGUaggc----CGCc -3' miRNA: 3'- aCGGCGCgCGCCGCAaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 39113 | 0.66 | 0.964968 |
Target: 5'- cGCUGCGCGacagggcuacguacaCGGCGUUgagccgcagguUUCcgCGCg -3' miRNA: 3'- aCGGCGCGC---------------GCCGCAAau---------AAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 82075 | 0.66 | 0.964294 |
Target: 5'- aGCCGgGCuCGGCGUcUGggCcaagCGCg -3' miRNA: 3'- aCGGCgCGcGCCGCAaAUaaGaa--GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 12924 | 0.66 | 0.964294 |
Target: 5'- cGCCGCGgggGCGcGCGUg---UCgUCGUg -3' miRNA: 3'- aCGGCGCg--CGC-CGCAaauaAGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 119602 | 0.66 | 0.965302 |
Target: 5'- gGCCGCGCGCgcaccGGCGccagcagccCGCg -3' miRNA: 3'- aCGGCGCGCG-----CCGCaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 124864 | 0.66 | 0.967575 |
Target: 5'- gGCgaGCGCGCGGCccgcgGUUUUUaUGCg -3' miRNA: 3'- aCGg-CGCGCGCCGcaaa-UAAGAA-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 5235 | 0.66 | 0.964294 |
Target: 5'- gGgCGCGCGCGGCaaaggGUUUgccUGCg -3' miRNA: 3'- aCgGCGCGCGCCGcaaa-UAAGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 100438 | 0.66 | 0.967575 |
Target: 5'- cGCUccaGCGCGGCGcgcaagUCcUCGCg -3' miRNA: 3'- aCGGcg-CGCGCCGCaaaua-AGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 52094 | 0.66 | 0.965633 |
Target: 5'- gGCCGCGcCGCGGCccaag-----CGCa -3' miRNA: 3'- aCGGCGC-GCGCCGcaaauaagaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 99107 | 0.66 | 0.964294 |
Target: 5'- aGCCGCGCGUaGUGcucg-UCcgCGCg -3' miRNA: 3'- aCGGCGCGCGcCGCaaauaAGaaGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 96678 | 0.66 | 0.963954 |
Target: 5'- cGUCGUGCGCgggggccGGCGggUAcgCgUCGCc -3' miRNA: 3'- aCGGCGCGCG-------CCGCaaAUaaGaAGCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 78294 | 0.66 | 0.967575 |
Target: 5'- gGCCGCcgggcgcagacgGCGCGGCGcgg---CgcgCGCg -3' miRNA: 3'- aCGGCG------------CGCGCCGCaaauaaGaa-GCG- -5' |
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6500 | 5' | -53.3 | NC_001847.1 | + | 34744 | 0.66 | 0.967575 |
Target: 5'- cGCaUGCGCGgGGCuUUUAUggcccaggUCGCg -3' miRNA: 3'- aCG-GCGCGCgCCGcAAAUAaga-----AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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