miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 36534 0.65 0.99313
Target:  5'- cGCUGCGCGAGGCggauUCGgagaUUGACGcgcuggcgccgcgcGCCUa -3'
miRNA:   3'- -CGGCGCGCUCUG----GGUa---AAUUGU--------------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 39363 0.65 0.993031
Target:  5'- cGCC-CGCGccGCCCcccgcgccagAGCGGCCCg -3'
miRNA:   3'- -CGGcGCGCucUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 76492 0.66 0.992414
Target:  5'- cGCCugcaGCGCcuGGGAgCCCGUguucGCGGCCUa -3'
miRNA:   3'- -CGG----CGCG--CUCU-GGGUAaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 108257 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 5025 0.66 0.992414
Target:  5'- -gCGCGCGAGggcgcucucguACUCGUcc--CAGCCCg -3'
miRNA:   3'- cgGCGCGCUC-----------UGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 131370 0.66 0.992414
Target:  5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3'
miRNA:   3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 87121 0.66 0.992414
Target:  5'- gGCCaGCGCGcGGCUCGgg-GGCuACCUc -3'
miRNA:   3'- -CGG-CGCGCuCUGGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 11441 0.66 0.992414
Target:  5'- uGCCGUGCGAccccgcgccagcGGCuaCCGUgcgcgUGGCgAGCCCc -3'
miRNA:   3'- -CGGCGCGCU------------CUG--GGUAa----AUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 34600 0.66 0.992414
Target:  5'- cGCCGCgGCcGGcuccccgcccACCCAcuccGCGACCCg -3'
miRNA:   3'- -CGGCG-CGcUC----------UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 67034 0.66 0.992414
Target:  5'- uGCCGCGuCGccGCCCuugUGGCAcgcugaGCCUa -3'
miRNA:   3'- -CGGCGC-GCucUGGGuaaAUUGU------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 120327 0.66 0.992414
Target:  5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3'
miRNA:   3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 102144 0.66 0.992414
Target:  5'- uCCGCGCGA--CCaCGgcggcGCGGCCCg -3'
miRNA:   3'- cGGCGCGCUcuGG-GUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16160 0.66 0.992414
Target:  5'- gGCCgGgGCGAccGCCCcgUUGGCcgcgGACCCc -3'
miRNA:   3'- -CGG-CgCGCUc-UGGGuaAAUUG----UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 64764 0.66 0.992414
Target:  5'- gGCCaGCGCGAGcucgcGCCCc---GGCGcCCCc -3'
miRNA:   3'- -CGG-CGCGCUC-----UGGGuaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 47865 0.66 0.992414
Target:  5'- uGCUGCGCGGGcgcGCgCAgcgcGCGcgcGCCCg -3'
miRNA:   3'- -CGGCGCGCUC---UGgGUaaauUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 126914 0.66 0.992414
Target:  5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3'
miRNA:   3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 5444 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 122825 0.66 0.992414
Target:  5'- aGCCG-GCGGGcgcGCCCAccgGGCccgcGCCCu -3'
miRNA:   3'- -CGGCgCGCUC---UGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 64592 0.66 0.992414
Target:  5'- gGCauugaGCGCGuGGCCCAcauuGCAAaCCUc -3'
miRNA:   3'- -CGg----CGCGCuCUGGGUaaauUGUU-GGG- -5'
6501 3' -51.1 NC_001847.1 + 103432 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.