Results 1 - 20 of 662 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6501 | 3' | -51.1 | NC_001847.1 | + | 36534 | 0.65 | 0.99313 |
Target: 5'- cGCUGCGCGAGGCggauUCGgagaUUGACGcgcuggcgccgcgcGCCUa -3' miRNA: 3'- -CGGCGCGCUCUG----GGUa---AAUUGU--------------UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 39363 | 0.65 | 0.993031 |
Target: 5'- cGCC-CGCGccGCCCcccgcgccagAGCGGCCCg -3' miRNA: 3'- -CGGcGCGCucUGGGuaaa------UUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 64592 | 0.66 | 0.992414 |
Target: 5'- gGCauugaGCGCGuGGCCCAcauuGCAAaCCUc -3' miRNA: 3'- -CGg----CGCGCuCUGGGUaaauUGUU-GGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 11441 | 0.66 | 0.992414 |
Target: 5'- uGCCGUGCGAccccgcgccagcGGCuaCCGUgcgcgUGGCgAGCCCc -3' miRNA: 3'- -CGGCGCGCU------------CUG--GGUAa----AUUG-UUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 103432 | 0.66 | 0.992414 |
Target: 5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3' miRNA: 3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 131370 | 0.66 | 0.992414 |
Target: 5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3' miRNA: 3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 126914 | 0.66 | 0.992414 |
Target: 5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3' miRNA: 3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 5444 | 0.66 | 0.992414 |
Target: 5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3' miRNA: 3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 16160 | 0.66 | 0.992414 |
Target: 5'- gGCCgGgGCGAccGCCCcgUUGGCcgcgGACCCc -3' miRNA: 3'- -CGG-CgCGCUc-UGGGuaAAUUG----UUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 67034 | 0.66 | 0.992414 |
Target: 5'- uGCCGCGuCGccGCCCuugUGGCAcgcugaGCCUa -3' miRNA: 3'- -CGGCGC-GCucUGGGuaaAUUGU------UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 120327 | 0.66 | 0.992414 |
Target: 5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3' miRNA: 3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 87121 | 0.66 | 0.992414 |
Target: 5'- gGCCaGCGCGcGGCUCGgg-GGCuACCUc -3' miRNA: 3'- -CGG-CGCGCuCUGGGUaaaUUGuUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 122825 | 0.66 | 0.992414 |
Target: 5'- aGCCG-GCGGGcgcGCCCAccgGGCccgcGCCCu -3' miRNA: 3'- -CGGCgCGCUC---UGGGUaaaUUGu---UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 34600 | 0.66 | 0.992414 |
Target: 5'- cGCCGCgGCcGGcuccccgcccACCCAcuccGCGACCCg -3' miRNA: 3'- -CGGCG-CGcUC----------UGGGUaaauUGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 76492 | 0.66 | 0.992414 |
Target: 5'- cGCCugcaGCGCcuGGGAgCCCGUguucGCGGCCUa -3' miRNA: 3'- -CGG----CGCG--CUCU-GGGUAaau-UGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 64764 | 0.66 | 0.992414 |
Target: 5'- gGCCaGCGCGAGcucgcGCCCc---GGCGcCCCc -3' miRNA: 3'- -CGG-CGCGCUC-----UGGGuaaaUUGUuGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 5025 | 0.66 | 0.992414 |
Target: 5'- -gCGCGCGAGggcgcucucguACUCGUcc--CAGCCCg -3' miRNA: 3'- cgGCGCGCUC-----------UGGGUAaauuGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 102144 | 0.66 | 0.992414 |
Target: 5'- uCCGCGCGA--CCaCGgcggcGCGGCCCg -3' miRNA: 3'- cGGCGCGCUcuGG-GUaaau-UGUUGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 47865 | 0.66 | 0.992414 |
Target: 5'- uGCUGCGCGGGcgcGCgCAgcgcGCGcgcGCCCg -3' miRNA: 3'- -CGGCGCGCUC---UGgGUaaauUGU---UGGG- -5' |
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6501 | 3' | -51.1 | NC_001847.1 | + | 108257 | 0.66 | 0.992414 |
Target: 5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3' miRNA: 3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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