miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 6987 0.66 0.583248
Target:  5'- gCGGGCCGCccagCAgauaaaacgcgacgaGCGGCcgcgcaUCCGCCa-- -3'
miRNA:   3'- aGCCCGGCGa---GU---------------UGCCG------AGGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 111833 0.66 0.583248
Target:  5'- gUGGcGCgGCUCAGCGGCgccgagcuggaguuuUaCCGCUUUCu -3'
miRNA:   3'- aGCC-CGgCGAGUUGCCG---------------A-GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 122872 0.66 0.583248
Target:  5'- gUGGGCgCGCUUggacucgcgggacugGugGGCaUCgcaGCCCUCg -3'
miRNA:   3'- aGCCCG-GCGAG---------------UugCCG-AGg--CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2799 0.66 0.579339
Target:  5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3'
miRNA:   3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5'
6501 5' -63.1 NC_001847.1 + 105612 0.66 0.579339
Target:  5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3'
miRNA:   3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5'
6501 5' -63.1 NC_001847.1 + 36841 0.66 0.579339
Target:  5'- -gGGGCuggcggacgugCGCUCGGCGGCggCCGagCUCu -3'
miRNA:   3'- agCCCG-----------GCGAGUUGCCGa-GGCggGAG- -5'
6501 5' -63.1 NC_001847.1 + 110971 0.66 0.579339
Target:  5'- -gGGGCUGCUUGGCuGGCcUCCaGCgUUCg -3'
miRNA:   3'- agCCCGGCGAGUUG-CCG-AGG-CGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 107442 0.66 0.579339
Target:  5'- gCGGGCgGCcCGcCGGCgcUCgCGCgCCUCa -3'
miRNA:   3'- aGCCCGgCGaGUuGCCG--AG-GCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 102085 0.66 0.579339
Target:  5'- gCGGGCCGCgcgcgacccggUCAauaaacuccuGCGccGCgUCCGCgCCUCg -3'
miRNA:   3'- aGCCCGGCG-----------AGU----------UGC--CG-AGGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 78295 0.66 0.579339
Target:  5'- gCGaGGCggUGCUCgGGCGGCUgggCCGCCCc- -3'
miRNA:   3'- aGC-CCG--GCGAG-UUGCCGA---GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 42070 0.66 0.579339
Target:  5'- cUGGuGCCGCU--GCGGCgcaUCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGAguUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 121780 0.66 0.579339
Target:  5'- gCGcGCCGUUC-GCGGCUggagCGUCCUCg -3'
miRNA:   3'- aGCcCGGCGAGuUGCCGAg---GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 110232 0.66 0.579339
Target:  5'- gCGGGCCGUgcuaaaCAugcGCGGCcugCuCGCCCg- -3'
miRNA:   3'- aGCCCGGCGa-----GU---UGCCGa--G-GCGGGag -5'
6501 5' -63.1 NC_001847.1 + 8158 0.66 0.579339
Target:  5'- -gGGGCUGCUUGGCuGGCcUCCaGCgUUCg -3'
miRNA:   3'- agCCCGGCGAGUUG-CCG-AGG-CGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 8967 0.66 0.579339
Target:  5'- gCGGucGCCGCUCAucuuGCGGUuguggCCGCCg-- -3'
miRNA:   3'- aGCC--CGGCGAGU----UGCCGa----GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 122773 0.66 0.579339
Target:  5'- cCGGGCCGUgcgcucCAGCaGGCUCCGgUggggcgcugaCUCg -3'
miRNA:   3'- aGCCCGGCGa-----GUUG-CCGAGGCgG----------GAG- -5'
6501 5' -63.1 NC_001847.1 + 107623 0.66 0.579339
Target:  5'- cUCGGgcguccccgccGCCGCcgCGGCGGCggCCGaggCCUCu -3'
miRNA:   3'- -AGCC-----------CGGCGa-GUUGCCGa-GGCg--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 4629 0.66 0.579339
Target:  5'- gCGGGCgGCcCGcCGGCgcUCgCGCgCCUCa -3'
miRNA:   3'- aGCCCGgCGaGUuGCCG--AG-GCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 25529 0.66 0.579339
Target:  5'- gCGGuuGgCGCgCAcCGGCUCCGCgaCCUCg -3'
miRNA:   3'- aGCC--CgGCGaGUuGCCGAGGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 117538 0.66 0.579339
Target:  5'- aCGaGGCCGUgcgCAACcccuuuccgcgGGCcCCGCCCg- -3'
miRNA:   3'- aGC-CCGGCGa--GUUG-----------CCGaGGCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.