miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6509 3' -62.1 NC_001847.1 + 75639 0.66 0.644534
Target:  5'- aCGGcGAuGCcgGAGCc-GGAGGCGCGGg -3'
miRNA:   3'- cGCCaCU-CG--CUCGucCCUCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 127925 0.66 0.644534
Target:  5'- aGCGcaGAGagaagaGAGCGGGcGGcGGCcGCGGCu -3'
miRNA:   3'- -CGCcaCUCg-----CUCGUCC-CU-CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 35881 0.66 0.644534
Target:  5'- gGCGGcagcugGAGUcGGCGGcGGcGGCGUGGg -3'
miRNA:   3'- -CGCCa-----CUCGcUCGUC-CCuCCGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 25458 0.66 0.644534
Target:  5'- uGCaGGccGAGCGcgcGCAGGGuGGCGUacucGGUa -3'
miRNA:   3'- -CG-CCa-CUCGCu--CGUCCCuCCGCG----CCG- -5'
6509 3' -62.1 NC_001847.1 + 18003 0.66 0.644534
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----CUCGU-CCCUCCGCgcCG- -5'
6509 3' -62.1 NC_001847.1 + 25112 0.66 0.644534
Target:  5'- aGCGcaGAGagaagaGAGCGGGcGGcGGCcGCGGCu -3'
miRNA:   3'- -CGCcaCUCg-----CUCGUCC-CU-CCG-CGCCG- -5'
6509 3' -62.1 NC_001847.1 + 26976 0.66 0.644534
Target:  5'- -aGGUGcGCGcGCAGcgcgucugcGGcGGCGCGGUu -3'
miRNA:   3'- cgCCACuCGCuCGUC---------CCuCCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 110942 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 47567 0.66 0.644534
Target:  5'- uCGGUGAGCacGGGCAccucgcccGAGGCGUaguGGCg -3'
miRNA:   3'- cGCCACUCG--CUCGUcc------CUCCGCG---CCG- -5'
6509 3' -62.1 NC_001847.1 + 8129 0.66 0.644534
Target:  5'- cGCGG--GGCGGGCGGGccgacGAGccucGCGgGGCu -3'
miRNA:   3'- -CGCCacUCGCUCGUCC-----CUC----CGCgCCG- -5'
6509 3' -62.1 NC_001847.1 + 74827 0.66 0.644534
Target:  5'- ----cGcGCGAGCAGGu-GGCGCGcGCg -3'
miRNA:   3'- cgccaCuCGCUCGUCCcuCCGCGC-CG- -5'
6509 3' -62.1 NC_001847.1 + 41627 0.66 0.643547
Target:  5'- cCGGggccgccGGGCGAGUGGGugcggauccacccGAcGCGCGGCa -3'
miRNA:   3'- cGCCa------CUCGCUCGUCC-------------CUcCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 83917 0.66 0.642559
Target:  5'- aGCGGcGcgcccGCGAGCAGGGcccgcucgaaguGcGCGCGGg -3'
miRNA:   3'- -CGCCaCu----CGCUCGUCCCu-----------C-CGCGCCg -5'
6509 3' -62.1 NC_001847.1 + 31305 0.66 0.63861
Target:  5'- cGCGGgGAGCGGGCucugcugcguGuuuucgcgcguguauGGGGaGUGCGGCu -3'
miRNA:   3'- -CGCCaCUCGCUCGu---------C---------------CCUC-CGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 31964 0.66 0.634661
Target:  5'- cGCGGcgcgcgGGGCGGGCcccGGGGCGCGaaGCc -3'
miRNA:   3'- -CGCCa-----CUCGCUCGuccCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 77824 0.66 0.634661
Target:  5'- uGUGGUuGGCGGuGCAGGGcucacgAGcuCGCGGCc -3'
miRNA:   3'- -CGCCAcUCGCU-CGUCCC------UCc-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 134777 0.66 0.634661
Target:  5'- cGCGGcgcgcgGGGCGGGCcccGGGGCGCGaaGCc -3'
miRNA:   3'- -CGCCa-----CUCGCUCGuccCUCCGCGC--CG- -5'
6509 3' -62.1 NC_001847.1 + 6658 0.66 0.634661
Target:  5'- cGUGGUGGauguaGAGCgAGGcuAGGcCGCGGCg -3'
miRNA:   3'- -CGCCACUcg---CUCG-UCCc-UCC-GCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 18230 0.66 0.633673
Target:  5'- gGCGGUcGuGCGcGCGGGuggauccaaGAuggccgcgaccgcGGCGCGGCu -3'
miRNA:   3'- -CGCCA-CuCGCuCGUCC---------CU-------------CCGCGCCG- -5'
6509 3' -62.1 NC_001847.1 + 107043 0.66 0.628735
Target:  5'- gGCGGUGucGCGcGCGgccccGGGcAGGCGCcacagcaccagaccgGGCa -3'
miRNA:   3'- -CGCCACu-CGCuCGU-----CCC-UCCGCG---------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.