miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 41859 0.66 0.828502
Target:  5'- gCCUGcGcGCCGCCgACAUcGCGgCGCGa -3'
miRNA:   3'- gGGGCaCaUGGUGG-UGUA-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 82610 0.66 0.828502
Target:  5'- gCCUGUGcGCCGCgCGCuggaGCuuGCCGCGc -3'
miRNA:   3'- gGGGCACaUGGUG-GUGua--CG--CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 99452 0.66 0.828502
Target:  5'- uCCUCcacgGCCGCCAgCAgcaGCGCCGCu -3'
miRNA:   3'- -GGGGcacaUGGUGGU-GUa--CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 18586 0.66 0.828502
Target:  5'- gCCCaCGUGcGCCAuuagcgcgccguCCGCGgcgucgGCGCgCGCGu -3'
miRNA:   3'- -GGG-GCACaUGGU------------GGUGUa-----CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 102210 0.66 0.828502
Target:  5'- cCCCCGgcc-CCGCCGCcgGCcUCGCu -3'
miRNA:   3'- -GGGGCacauGGUGGUGuaCGcGGCGc -5'
6515 3' -58.4 NC_001847.1 + 109531 0.66 0.828502
Target:  5'- aCUCGUGcACUugCGCGUGCGUgcucggaGCGu -3'
miRNA:   3'- gGGGCACaUGGugGUGUACGCGg------CGC- -5'
6515 3' -58.4 NC_001847.1 + 67191 0.66 0.828502
Target:  5'- aCCCCc--UGCCGCgGCuGUGUGCCGUc -3'
miRNA:   3'- -GGGGcacAUGGUGgUG-UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 14796 0.66 0.828502
Target:  5'- gUCCCGuUGUAgCGCCGCccG-GCCGgGa -3'
miRNA:   3'- -GGGGC-ACAUgGUGGUGuaCgCGGCgC- -5'
6515 3' -58.4 NC_001847.1 + 12617 0.66 0.828502
Target:  5'- cCCCCGcuccucaacaUGgagGCgGCCGC-UGCGgCUGCGg -3'
miRNA:   3'- -GGGGC----------ACa--UGgUGGUGuACGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 48625 0.66 0.828502
Target:  5'- -gCCGaUGUgaacGCCGCgGCGgcgggGCGCCGCc -3'
miRNA:   3'- ggGGC-ACA----UGGUGgUGUa----CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 2747 0.66 0.828502
Target:  5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3'
miRNA:   3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 38877 0.66 0.828502
Target:  5'- gCCCCGguuccgGCC-CCGCcauUGCcGCCGCc -3'
miRNA:   3'- -GGGGCaca---UGGuGGUGu--ACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 75132 0.66 0.828502
Target:  5'- gCCCGg--GCC-CCGCcgGgGCCgGCGg -3'
miRNA:   3'- gGGGCacaUGGuGGUGuaCgCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 85422 0.66 0.828502
Target:  5'- gCCUCGccGgcgcccACUugCACggGCGCCGCGc -3'
miRNA:   3'- -GGGGCa-Ca-----UGGugGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 30936 0.66 0.828502
Target:  5'- gCCCCGcgcgaGUACCGgcagCGCGUGCuGCCgGCGc -3'
miRNA:   3'- -GGGGCa----CAUGGUg---GUGUACG-CGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 90719 0.66 0.828502
Target:  5'- cCCCCGUGcGCgaacgcaGCCGCucGCGgCGCGu -3'
miRNA:   3'- -GGGGCACaUGg------UGGUGuaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 105851 0.66 0.828502
Target:  5'- gCCgCGgccucUGCCGCCA---GCGCCGCGc -3'
miRNA:   3'- -GGgGCac---AUGGUGGUguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 105560 0.66 0.828502
Target:  5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3'
miRNA:   3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 18875 0.66 0.828502
Target:  5'- gCCUCGccgagcgGcGCCAgaguCCGCA-GCGCCGCGu -3'
miRNA:   3'- -GGGGCa------CaUGGU----GGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 89087 0.66 0.828502
Target:  5'- cCCaCCGggaGUACCGCgugcgCACAgaaggcaGCGCCGCc -3'
miRNA:   3'- -GG-GGCa--CAUGGUG-----GUGUa------CGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.