Results 1 - 20 of 425 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 2747 | 0.66 | 0.828502 |
Target: 5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3' miRNA: 3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 20252 | 0.66 | 0.828502 |
Target: 5'- cCCCCGcgcgcgccaUGUGCUauccuuuaaagGCCGCAcccaGCGCCgGCGu -3' miRNA: 3'- -GGGGC---------ACAUGG-----------UGGUGUa---CGCGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 12617 | 0.66 | 0.828502 |
Target: 5'- cCCCCGcuccucaacaUGgagGCgGCCGC-UGCGgCUGCGg -3' miRNA: 3'- -GGGGC----------ACa--UGgUGGUGuACGC-GGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 14796 | 0.66 | 0.828502 |
Target: 5'- gUCCCGuUGUAgCGCCGCccG-GCCGgGa -3' miRNA: 3'- -GGGGC-ACAUgGUGGUGuaCgCGGCgC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 67191 | 0.66 | 0.828502 |
Target: 5'- aCCCCc--UGCCGCgGCuGUGUGCCGUc -3' miRNA: 3'- -GGGGcacAUGGUGgUG-UACGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 109531 | 0.66 | 0.828502 |
Target: 5'- aCUCGUGcACUugCGCGUGCGUgcucggaGCGu -3' miRNA: 3'- gGGGCACaUGGugGUGUACGCGg------CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 102210 | 0.66 | 0.828502 |
Target: 5'- cCCCCGgcc-CCGCCGCcgGCcUCGCu -3' miRNA: 3'- -GGGGCacauGGUGGUGuaCGcGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 18586 | 0.66 | 0.828502 |
Target: 5'- gCCCaCGUGcGCCAuuagcgcgccguCCGCGgcgucgGCGCgCGCGu -3' miRNA: 3'- -GGG-GCACaUGGU------------GGUGUa-----CGCG-GCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 99452 | 0.66 | 0.828502 |
Target: 5'- uCCUCcacgGCCGCCAgCAgcaGCGCCGCu -3' miRNA: 3'- -GGGGcacaUGGUGGU-GUa--CGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 82610 | 0.66 | 0.828502 |
Target: 5'- gCCUGUGcGCCGCgCGCuggaGCuuGCCGCGc -3' miRNA: 3'- gGGGCACaUGGUG-GUGua--CG--CGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 48625 | 0.66 | 0.828502 |
Target: 5'- -gCCGaUGUgaacGCCGCgGCGgcgggGCGCCGCc -3' miRNA: 3'- ggGGC-ACA----UGGUGgUGUa----CGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 85422 | 0.66 | 0.828502 |
Target: 5'- gCCUCGccGgcgcccACUugCACggGCGCCGCGc -3' miRNA: 3'- -GGGGCa-Ca-----UGGugGUGuaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 38877 | 0.66 | 0.828502 |
Target: 5'- gCCCCGguuccgGCC-CCGCcauUGCcGCCGCc -3' miRNA: 3'- -GGGGCaca---UGGuGGUGu--ACG-CGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 89087 | 0.66 | 0.828502 |
Target: 5'- cCCaCCGggaGUACCGCgugcgCACAgaaggcaGCGCCGCc -3' miRNA: 3'- -GG-GGCa--CAUGGUG-----GUGUa------CGCGGCGc -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 18875 | 0.66 | 0.828502 |
Target: 5'- gCCUCGccgagcgGcGCCAgaguCCGCA-GCGCCGCGu -3' miRNA: 3'- -GGGGCa------CaUGGU----GGUGUaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 41859 | 0.66 | 0.828502 |
Target: 5'- gCCUGcGcGCCGCCgACAUcGCGgCGCGa -3' miRNA: 3'- gGGGCaCaUGGUGG-UGUA-CGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 105851 | 0.66 | 0.828502 |
Target: 5'- gCCgCGgccucUGCCGCCA---GCGCCGCGc -3' miRNA: 3'- -GGgGCac---AUGGUGGUguaCGCGGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 90719 | 0.66 | 0.828502 |
Target: 5'- cCCCCGUGcGCgaacgcaGCCGCucGCGgCGCGu -3' miRNA: 3'- -GGGGCACaUGg------UGGUGuaCGCgGCGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 30936 | 0.66 | 0.828502 |
Target: 5'- gCCCCGcgcgaGUACCGgcagCGCGUGCuGCCgGCGc -3' miRNA: 3'- -GGGGCa----CAUGGUg---GUGUACG-CGG-CGC- -5' |
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6515 | 3' | -58.4 | NC_001847.1 | + | 105560 | 0.66 | 0.828502 |
Target: 5'- cCCCCGgc--CCGgCGCGgcgGCGCCgGCGc -3' miRNA: 3'- -GGGGCacauGGUgGUGUa--CGCGG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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