miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6517 5' -50.6 NC_001847.1 + 52491 0.66 0.99164
Target:  5'- -cGGCGCGCCG-CGcUCGCGggUucggGUGg -3'
miRNA:   3'- auCUGCGCGGUuGU-AGUGCuuG----UACa -5'
6517 5' -50.6 NC_001847.1 + 72765 0.66 0.99164
Target:  5'- aAGACGCGUCGgGCggCGCG-GCGUGc -3'
miRNA:   3'- aUCUGCGCGGU-UGuaGUGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 47872 0.66 0.99164
Target:  5'- cGGGCGCGCgCAGCG-CGCGcGCGc-- -3'
miRNA:   3'- aUCUGCGCG-GUUGUaGUGCuUGUaca -5'
6517 5' -50.6 NC_001847.1 + 123549 0.66 0.99164
Target:  5'- aGGACGCGCCGGCcagCGCaGAAgCAa-- -3'
miRNA:   3'- aUCUGCGCGGUUGua-GUG-CUU-GUaca -5'
6517 5' -50.6 NC_001847.1 + 68068 0.66 0.99164
Target:  5'- -cGGCGCGCCugcGGCGggGCGAACGc-- -3'
miRNA:   3'- auCUGCGCGG---UUGUagUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 21539 0.66 0.99164
Target:  5'- --aACGCGCCcaagcuggcACAUCGCGuguGCGUGa -3'
miRNA:   3'- aucUGCGCGGu--------UGUAGUGCu--UGUACa -5'
6517 5' -50.6 NC_001847.1 + 43715 0.66 0.99164
Target:  5'- --uGCGCGCgCuGCG-CGCGGACGUGg -3'
miRNA:   3'- aucUGCGCG-GuUGUaGUGCUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 21508 0.66 0.99164
Target:  5'- cGGGCGCGCCucggcgggGGCcgCGCGGGCc--- -3'
miRNA:   3'- aUCUGCGCGG--------UUGuaGUGCUUGuaca -5'
6517 5' -50.6 NC_001847.1 + 133322 0.66 0.991281
Target:  5'- cGGGCGCGCCgGACGUgagcgcgcucggcgCGCaGGGCGUGc -3'
miRNA:   3'- aUCUGCGCGG-UUGUA--------------GUG-CUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 30509 0.66 0.991281
Target:  5'- cGGGCGCGCCgGACGUgagcgcgcucggcgCGCaGGGCGUGc -3'
miRNA:   3'- aUCUGCGCGG-UUGUA--------------GUG-CUUGUACa -5'
6517 5' -50.6 NC_001847.1 + 45393 0.66 0.990396
Target:  5'- aGGugGCGCCGACGgugCcuaGGAgGUGg -3'
miRNA:   3'- aUCugCGCGGUUGUa--Gug-CUUgUACa -5'
6517 5' -50.6 NC_001847.1 + 58109 0.66 0.990396
Target:  5'- -cGAUG-GCCGACGUCGgGGggGCAUGa -3'
miRNA:   3'- auCUGCgCGGUUGUAGUgCU--UGUACa -5'
6517 5' -50.6 NC_001847.1 + 3709 0.66 0.990396
Target:  5'- gUAGGCGCGgCAAUcgCGCGcGCcgGc -3'
miRNA:   3'- -AUCUGCGCgGUUGuaGUGCuUGuaCa -5'
6517 5' -50.6 NC_001847.1 + 83413 0.66 0.990396
Target:  5'- cAGcCGCGCCGGCAUUugGuuGCGc-- -3'
miRNA:   3'- aUCuGCGCGGUUGUAGugCu-UGUaca -5'
6517 5' -50.6 NC_001847.1 + 19675 0.66 0.990396
Target:  5'- cAGACGUGCCcg---CGCGggUGUGg -3'
miRNA:   3'- aUCUGCGCGGuuguaGUGCuuGUACa -5'
6517 5' -50.6 NC_001847.1 + 106286 0.66 0.990396
Target:  5'- --aGCGcCGCCGGCGUCGCGcGCGc-- -3'
miRNA:   3'- aucUGC-GCGGUUGUAGUGCuUGUaca -5'
6517 5' -50.6 NC_001847.1 + 27110 0.66 0.990396
Target:  5'- gAGGuCGCGCCAagccucuucgACGUCGCGAAa---- -3'
miRNA:   3'- aUCU-GCGCGGU----------UGUAGUGCUUguaca -5'
6517 5' -50.6 NC_001847.1 + 20467 0.66 0.990396
Target:  5'- aAGGCGUGCCGc---CACGAGCAa-- -3'
miRNA:   3'- aUCUGCGCGGUuguaGUGCUUGUaca -5'
6517 5' -50.6 NC_001847.1 + 63092 0.66 0.990396
Target:  5'- --uGCGCGCCAACcgC-CGcGCGUGc -3'
miRNA:   3'- aucUGCGCGGUUGuaGuGCuUGUACa -5'
6517 5' -50.6 NC_001847.1 + 37917 0.66 0.989011
Target:  5'- --cGCGUGCCGACGgcgcagCugGAGCAgcUGUc -3'
miRNA:   3'- aucUGCGCGGUUGUa-----GugCUUGU--ACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.