miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 5' -54.2 NC_001847.1 + 81579 0.66 0.950695
Target:  5'- cGGGGCCGGc--GGCUaCGGGagCGUCGUu -3'
miRNA:   3'- -UCUCGGCUucuCCGA-GUUCa-GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 62789 0.66 0.950695
Target:  5'- uGGGcCCGggGGGGC--GAGaUCG-CGCa -3'
miRNA:   3'- uCUC-GGCuuCUCCGagUUC-AGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 16964 0.66 0.950695
Target:  5'- gAGGGCCGGgcggcagauugAGGGGCaccgUCAGGaCGUCcuugGCa -3'
miRNA:   3'- -UCUCGGCU-----------UCUCCG----AGUUCaGCAG----CG- -5'
6518 5' -54.2 NC_001847.1 + 52957 0.66 0.950695
Target:  5'- aGGaAGUCGAGGAGcauCUcCGAGggccgCGUCGCg -3'
miRNA:   3'- -UC-UCGGCUUCUCc--GA-GUUCa----GCAGCG- -5'
6518 5' -54.2 NC_001847.1 + 104830 0.66 0.946372
Target:  5'- --cGCCGggGGGGCg--GG-CGUcCGCa -3'
miRNA:   3'- ucuCGGCuuCUCCGaguUCaGCA-GCG- -5'
6518 5' -54.2 NC_001847.1 + 90323 0.66 0.946372
Target:  5'- uGGGGCCGccGGGGC-CGGGgg--CGCa -3'
miRNA:   3'- -UCUCGGCuuCUCCGaGUUCagcaGCG- -5'
6518 5' -54.2 NC_001847.1 + 116422 0.66 0.946372
Target:  5'- cGGGCCGcgcgcuuGGGCUCGAGggCGgugggCGCu -3'
miRNA:   3'- uCUCGGCuuc----UCCGAGUUCa-GCa----GCG- -5'
6518 5' -54.2 NC_001847.1 + 54532 0.66 0.941806
Target:  5'- cGGGGCCGuccGGGGGCgcagacggCGGGggCGgCGCg -3'
miRNA:   3'- -UCUCGGCu--UCUCCGa-------GUUCa-GCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 129951 0.66 0.941806
Target:  5'- gAGAGCCGgcGAGGgCUUcucccgCGcCGCg -3'
miRNA:   3'- -UCUCGGCuuCUCC-GAGuuca--GCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 110447 0.66 0.941806
Target:  5'- uGGAGCgCGAGG-GGCU-AGG-CGUCGa -3'
miRNA:   3'- -UCUCG-GCUUCuCCGAgUUCaGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 27138 0.66 0.941806
Target:  5'- gAGAGCCGgcGAGGgCUUcucccgCGcCGCg -3'
miRNA:   3'- -UCUCGGCuuCUCC-GAGuuca--GCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 19250 0.66 0.941806
Target:  5'- cGAGCCGGccaAGcGGCgCGAGcCGgcggCGCa -3'
miRNA:   3'- uCUCGGCU---UCuCCGaGUUCaGCa---GCG- -5'
6518 5' -54.2 NC_001847.1 + 61451 0.66 0.936995
Target:  5'- cGGGCgCGgcGAGGC---GGUCG-CGCa -3'
miRNA:   3'- uCUCG-GCuuCUCCGaguUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 51852 0.66 0.936995
Target:  5'- cGGGUCGAucaGGAGGCcgCAGGU-GUgCGCc -3'
miRNA:   3'- uCUCGGCU---UCUCCGa-GUUCAgCA-GCG- -5'
6518 5' -54.2 NC_001847.1 + 119129 0.66 0.936995
Target:  5'- uGGGGCCGucGAuGGCgagCucGUCGgCGCc -3'
miRNA:   3'- -UCUCGGCuuCU-CCGa--GuuCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 70366 0.66 0.931938
Target:  5'- aAGAG-CGAGGGGGCgccggggcgCGAGcUCG-CGCu -3'
miRNA:   3'- -UCUCgGCUUCUCCGa--------GUUC-AGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 80723 0.66 0.931938
Target:  5'- ---aCCGGagGGAGGCgaucuUCAAGUCG-CGCg -3'
miRNA:   3'- ucucGGCU--UCUCCG-----AGUUCAGCaGCG- -5'
6518 5' -54.2 NC_001847.1 + 114100 0.66 0.931938
Target:  5'- cAGGGCCGggGGucucGGggCAAGcUUGcUCGCa -3'
miRNA:   3'- -UCUCGGCuuCU----CCgaGUUC-AGC-AGCG- -5'
6518 5' -54.2 NC_001847.1 + 126229 0.66 0.926634
Target:  5'- cGGGGUCGucggcGGGGCgUCcgGGGUCGUCGg -3'
miRNA:   3'- -UCUCGGCuu---CUCCG-AG--UUCAGCAGCg -5'
6518 5' -54.2 NC_001847.1 + 35341 0.66 0.926634
Target:  5'- uGGAgcuGCCGAGcGAGGCUCugaUCGcgagCGCg -3'
miRNA:   3'- -UCU---CGGCUU-CUCCGAGuucAGCa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.