miRNA display CGI


Results 1 - 20 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 30910 0.66 0.874278
Target:  5'- cGGugaGGCGCGCGCCggcggUGCGGCgGAGg -3'
miRNA:   3'- aCCuggCUGCGUGCGG-----AUGUUGgCUU- -5'
6527 3' -56.5 NC_001847.1 + 45834 0.66 0.874278
Target:  5'- cGGGCCacuCGCugGgCggcACGGCCGAGg -3'
miRNA:   3'- aCCUGGcu-GCGugCgGa--UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 112869 0.66 0.874278
Target:  5'- -cGGCCGAcaCGCGCGCgCUGC-GCCGc- -3'
miRNA:   3'- acCUGGCU--GCGUGCG-GAUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 119840 0.66 0.874278
Target:  5'- cGGGUCG-CGCACGCCcgcgcGCAGCCa-- -3'
miRNA:   3'- aCCUGGCuGCGUGCGGa----UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 42027 0.66 0.874278
Target:  5'- cGuGCCGGCGCgGCGCCUuuAUAGCCc-- -3'
miRNA:   3'- aCcUGGCUGCG-UGCGGA--UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 132449 0.66 0.874278
Target:  5'- aGGGCCGGgGCGcCGCggGCGGacCCGGAg -3'
miRNA:   3'- aCCUGGCUgCGU-GCGgaUGUU--GGCUU- -5'
6527 3' -56.5 NC_001847.1 + 14386 0.66 0.874278
Target:  5'- cGcGGCCGugGUG-GCCUugcaggagGCGACCGAGc -3'
miRNA:   3'- aC-CUGGCugCGUgCGGA--------UGUUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 74600 0.66 0.874278
Target:  5'- aGGACggCGugGCcaACGCCaucgUGCAGCUGGg -3'
miRNA:   3'- aCCUG--GCugCG--UGCGG----AUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 29636 0.66 0.874278
Target:  5'- aGGGCCGGgGCGcCGCggGCGGacCCGGAg -3'
miRNA:   3'- aCCUGGCUgCGU-GCGgaUGUU--GGCUU- -5'
6527 3' -56.5 NC_001847.1 + 10056 0.66 0.874278
Target:  5'- -cGGCCGAcaCGCGCGCgCUGC-GCCGc- -3'
miRNA:   3'- acCUGGCU--GCGUGCG-GAUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 21344 0.66 0.874278
Target:  5'- gUGGcgcagaCGAUGCGCGCCgucgGCGGCuCGGg -3'
miRNA:   3'- -ACCug----GCUGCGUGCGGa---UGUUG-GCUu -5'
6527 3' -56.5 NC_001847.1 + 9977 0.66 0.874278
Target:  5'- cUGGGCCccgaGGCGCuGCGCCUcGCcAUCGAc -3'
miRNA:   3'- -ACCUGG----CUGCG-UGCGGA-UGuUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 28104 0.66 0.874278
Target:  5'- gGGGCCG-CGCGCGaC-ACcGCCGAu -3'
miRNA:   3'- aCCUGGCuGCGUGCgGaUGuUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 946 0.66 0.874278
Target:  5'- cGGcCCG-CGCGCGCCgcuccACGcugcGCCGGg -3'
miRNA:   3'- aCCuGGCuGCGUGCGGa----UGU----UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 98781 0.66 0.873544
Target:  5'- cGGGCCgcggcggcgccgcGugGCGCGCCgcggcgcGCGGCaCGAGc -3'
miRNA:   3'- aCCUGG-------------CugCGUGCGGa------UGUUG-GCUU- -5'
6527 3' -56.5 NC_001847.1 + 56827 0.66 0.869842
Target:  5'- cGGGCCcgcGGCGCGCGCgccgcgccgcgccguCUGCGcCCGGc -3'
miRNA:   3'- aCCUGG---CUGCGUGCG---------------GAUGUuGGCUu -5'
6527 3' -56.5 NC_001847.1 + 123471 0.66 0.866841
Target:  5'- aUGaGGCCGAUGCAgCGCCcccuucaccGCcGCCGGAa -3'
miRNA:   3'- -AC-CUGGCUGCGU-GCGGa--------UGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 104384 0.66 0.866841
Target:  5'- aGGccaGCaCGGCGCGCGCCaGCGcGCCGc- -3'
miRNA:   3'- aCC---UG-GCUGCGUGCGGaUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 68060 0.66 0.866841
Target:  5'- cGGcCUcGCgGCGCGCCUGCGGCgGGg -3'
miRNA:   3'- aCCuGGcUG-CGUGCGGAUGUUGgCUu -5'
6527 3' -56.5 NC_001847.1 + 130528 0.66 0.866841
Target:  5'- cGGGCCGcC-CGCGCCgaGCuGGCCGAGc -3'
miRNA:   3'- aCCUGGCuGcGUGCGGa-UG-UUGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.