miRNA display CGI


Results 1 - 20 of 590 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 62817 0.66 0.619833
Target:  5'- aGCcGGGCCGagUCGCGCagcu-GCCGCa -3'
miRNA:   3'- aCGcUCCGGC--AGCGCGagcacCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 44840 0.66 0.619833
Target:  5'- -aUGGGcGCgGUCGCGCUCcaaaaacgcacGUcGCCGCg -3'
miRNA:   3'- acGCUC-CGgCAGCGCGAG-----------CAcCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 61357 0.66 0.619833
Target:  5'- gUGCGcuuccAGcGCCc-CGCGCUCGUagcGGcCCGCg -3'
miRNA:   3'- -ACGC-----UC-CGGcaGCGCGAGCA---CC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 27640 0.66 0.619833
Target:  5'- cGCucGGCacUCGCGCUCG-GGUCGg -3'
miRNA:   3'- aCGcuCCGgcAGCGCGAGCaCCGGCg -5'
6527 5' -62.7 NC_001847.1 + 70369 0.66 0.619833
Target:  5'- aGCGAGggggcGCCGgggCGCgaGCUCGcgcUGGCCa- -3'
miRNA:   3'- aCGCUC-----CGGCa--GCG--CGAGC---ACCGGcg -5'
6527 5' -62.7 NC_001847.1 + 79074 0.66 0.619833
Target:  5'- aGCcGGGCgCGUgcgacgUGUGCcCGUGcGCCGCg -3'
miRNA:   3'- aCGcUCCG-GCA------GCGCGaGCAC-CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 78648 0.66 0.619833
Target:  5'- gGCGGcGCgGUCGCGCgcgccugCGUcGCCGg -3'
miRNA:   3'- aCGCUcCGgCAGCGCGa------GCAcCGGCg -5'
6527 5' -62.7 NC_001847.1 + 3982 0.66 0.619833
Target:  5'- cGCcgGGGGCCGggCGCGCggccccgCG-GGgCGCc -3'
miRNA:   3'- aCG--CUCCGGCa-GCGCGa------GCaCCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 11685 0.66 0.619833
Target:  5'- cGCGGcGGCCGUCGC-Cg---GGCCa- -3'
miRNA:   3'- aCGCU-CCGGCAGCGcGagcaCCGGcg -5'
6527 5' -62.7 NC_001847.1 + 81047 0.66 0.619833
Target:  5'- cUGCGGGGgCGaCGUGggCGUGGgCGg -3'
miRNA:   3'- -ACGCUCCgGCaGCGCgaGCACCgGCg -5'
6527 5' -62.7 NC_001847.1 + 41627 0.66 0.619833
Target:  5'- -cCGGGGCCGcCGgGCgaGUGGgUGCg -3'
miRNA:   3'- acGCUCCGGCaGCgCGagCACCgGCG- -5'
6527 5' -62.7 NC_001847.1 + 5310 0.66 0.619833
Target:  5'- gGCGAGGCgggCGUUGaacaGCUCGUuGCgGUu -3'
miRNA:   3'- aCGCUCCG---GCAGCg---CGAGCAcCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 51386 0.66 0.619833
Target:  5'- cGCgGAGGCCGcggUCGCGgcgccgaacCUUGcGGCgGCg -3'
miRNA:   3'- aCG-CUCCGGC---AGCGC---------GAGCaCCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 83329 0.66 0.619833
Target:  5'- cGUGAGGuuGaCGUagUUGaUGGCCGCg -3'
miRNA:   3'- aCGCUCCggCaGCGcgAGC-ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 95279 0.66 0.619833
Target:  5'- cGgGGGcGCCGgCaaGCUUGcGGCCGCu -3'
miRNA:   3'- aCgCUC-CGGCaGcgCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 10378 0.66 0.619833
Target:  5'- cGgGucGCCGcUCGCGg-CGgGGCCGCu -3'
miRNA:   3'- aCgCucCGGC-AGCGCgaGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 88597 0.66 0.618852
Target:  5'- cGCGcGGCUGgaggaccUCGCGCgCGccGCCGCc -3'
miRNA:   3'- aCGCuCCGGC-------AGCGCGaGCacCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 94178 0.66 0.618852
Target:  5'- gGCGcGGCCGccUCGCGCgggcaguUCGagGcGCUGCg -3'
miRNA:   3'- aCGCuCCGGC--AGCGCG-------AGCa-C-CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 6305 0.66 0.618852
Target:  5'- gGCGAGGUCGgccucgaugCGCGCggccaCGUacgcgggugccccGGCgGCa -3'
miRNA:   3'- aCGCUCCGGCa--------GCGCGa----GCA-------------CCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 66685 0.66 0.61787
Target:  5'- gGCGGGGCCccggccgcgggCGCGgacCUCuGcGGCCGCu -3'
miRNA:   3'- aCGCUCCGGca---------GCGC---GAG-CaCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.